Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71G12B.17
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Query: Y71G12B.17 CE27026 status:Partially_confirmed TR:Q95XP0 protein_id:AAK73916.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IP_trans Phosphatidylinositol transfer protein 285.6 4.9e-82 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IP_trans 1/1 106 356 .. 1 256 [] 285.6 4.9e-82
Alignments of top-scoring domains:
IP_trans: domain 1 of 1, from 106 to 356: score 285.6, E = 4.9e-82
*->mLiKEYrilLPlsvdEYqvaQLYmiakkSreeshGegsGVEilaNeP
m +KEYri+LPl+vdE+ + LY + Sr+e++G g+GVE l+ e
Y71G12B.17 106 MIVKEYRIPLPLTVDEFERGLLYAVSACSRNETGG-GEGVEFLVQED 151
Yedg...PGg..kGQYThKiYHvgskiPawirmllPkgALevhEeawnAY
++ + +PG + +G YT+KiY ++sk P ++ llP A ++ Ee+wnAY
Y71G12B.17 152 FTSNtlrPGQtvSGTYTKKIYRLRSKAPWVLQKLLPPEAFVIYEESWNAY 201
PytrTrytcp.ymvekFsieiETyykpDlGqqeNVfnLsgkdkktriidy
Py++T+ t+p+ym++ F iET +++D+G eN L+g +k r+i+
Y71G12B.17 202 PYCKTVLTNPgYMKDNFHQIIETIHLDDNGSSEN--PLDGPEK--REIVF 247
iDivkrdqvasgdYkaeEDPklfkSvkTgRGPLgddWkkelaktgdlplM
iDi++ d ++Y +e D +lf ++ +RGPL +dW e+ p+M
Y71G12B.17 248 IDIADNDIFGTKNYEKEKDARLFEAETVERGPLDEDWIDEH---D--PVM 292
cAYKLckVeFryWGlQtkvEkFIhdvalrrvmlraHRQawcWqDeWtdLt
c YKL+ F++ GlQ vEk +h++ rv+ +HR a+ +D W++++
Y71G12B.17 293 CCYKLVSCHFKWTGLQRMVEKTVHKQ-YPRVFGLMHRDAYVLLDNWFNMS 341
meDIRrLEeetareL<-*
me IR+ E+ t L
Y71G12B.17 342 MESIREYERATGDIL 356