Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71G12B.23
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Query: Y71G12B.23 CE27027 status:Partially_confirmed TR:Q95XN9 protein_id:AAK73924.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UPF0073 Uncharacterised protein family (Hly-II 88.7 3e-24 1
DNA_gyraseA_C DNA gyrase C-terminal domain, beta-pro 5.6 9 1
Mov34 Mov34/MPN/PAD-1 family 4.3 9.7 1
invertase_neut Plant neutral invertase 1.4 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
invertase_neut 1/1 1 21 [. 1 21 [. 1.4 8.6
Mov34 1/1 96 112 .. 104 120 .] 4.3 9.7
DNA_gyraseA_C 1/1 287 303 .. 1 17 [. 5.6 9
UPF0073 1/1 374 582 .. 1 244 [] 88.7 3e-24
Alignments of top-scoring domains:
invertase_neut: domain 1 of 1, from 1 to 21: score 1.4, E = 8.6
*->kksleaqeiedeAWrLlLrka<-*
+ks+e ie A+r+++ +
Y71G12B.23 1 MKSPESADIELKARRIAYQMS 21
Mov34: domain 1 of 1, from 96 to 112: score 4.3, E = 9.7
*->SevDvhtqelyqryipe<-*
++ Dv+++e++ +++++
Y71G12B.23 96 TSPDVEINEKNDKIWEN 112
DNA_gyraseA_C: domain 1 of 1, from 287 to 303: score 5.6, E = 9
*->eddlllvTsnGyvkRtp<-*
+d++++vTs+G+++ tp
Y71G12B.23 287 TDNVITVTSRGRIVATP 303
UPF0073: domain 1 of 1, from 374 to 582: score 88.7, E = 3e-24
*->FswhnEtaNiwTHLiGailfiillvllvvyaslpngssapsalkvva
+ h+ +aN ++H iG+ i+ + +++ ++ +++ ++++
Y71G12B.23 374 PTSHEHVANTVSHAIGIGPTILVFYYFMCAYA-HRD-----LQHI-- 412
WvfsifgvsafllllaStlyHtf.......schsekakkifrklDyaGIy
++i+g+ +ll+++St yH + ++++ h++ +++ ++++D a+Iy
Y71G12B.23 413 -LMIIYGIFTTLLFTSSTVYHFCellfrqqNKHRK-LRYYLHICDRAAIY 460
llIaGSytPil...yyafrgplchtilriiyiwilailGilaivvslwdk
l+Ia+SytP+l+ +++++ p + ++ iw+ ailGil+
Y71G12B.23 461 LFIAASYTPWLtlrHCGL--PGLNLKWM---IWVFAILGILY-------- 497
FsepkfRpvravffkrfrklslglygvmgwlhviaikglsealsriglll
f++r++ l ++ly+++ + +ai++ ++r+gl +
Y71G12B.23 498 ---------QYNFHERYKTLETILYILIAAGPSVAIFT---MNDRTGLEW 535
lvlggvlYtvGavFYaariPERwfpgkfdiwGhSHqifHlFVvlaallHf
+ gg++Y vG++F+ ++ + f+ H+i+HlFV+l+a +H
Y71G12B.23 536 MMTGGMMYAVGVFFFKLD-----GIVAFA-----HAIWHLFVLLGASCHT 575
vaillyy<-*
+a++ ++
Y71G12B.23 576 YAVYAFL 582