Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71G12B.14
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Query: Y71G12B.14 CE22886 status:Confirmed TR:Q95XN6 protein_id:AAK73913.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sm Sm protein 80.6 1.7e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Sm 1/1 9 74 .. 1 55 [] 80.6 1.7e-21
Alignments of top-scoring domains:
Sm: domain 1 of 1, from 9 to 74: score 80.6, E = 1.7e-21
*->sfLkklidkrVlVeLknGreirGtLkgfDqfmNlvLddveEtl....
+fLkk i+k+V+V+L++G +rG+L + D++mN+ L+++eE+ +++
Y71G12B.14 9 EFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSngql 55
.......liRGnnvvlisp<-*
+++ ++ +iRGnnv++is
Y71G12B.14 56 qnkygdaFIRGNNVLYIST 74