Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71G12B.10
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Query: Y71G12B.10 CE26261 status:Confirmed TR:Q95XN1 protein_id:AAK73908.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HMGL-like HMGL-like 248.5 9.4e-71 1
DUF473 Protein of unknown function (DUF473) 3.9 7.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF473 1/1 133 152 .. 100 119 .] 3.9 7.6
HMGL-like 1/1 27 306 .. 1 307 [] 248.5 9.4e-71
Alignments of top-scoring domains:
DUF473: domain 1 of 1, from 133 to 152: score 3.9, E = 7.6
*->gLgrlvkvkekevlitvkvd<-*
+L +l++v +++ + ++v+
Y71G12B.10 133 SLKKLMEVTKIALENNIRVR 152
HMGL-like: domain 1 of 1, from 27 to 306: score 248.5, E = 9.4e-71
*->TLRDGeQalgaalsveeKlaIAkaLdeaGvdeIEvGsffpamsegef
RDG+Qa++ ++ +e K+++++ L+e G+ + E +sf+++ ++++
Y71G12B.10 27 --RDGLQAEKKFVPTEIKVELIDRLSECGFQTVETTSFVSPKWVPQL 71
esvreiakllpkaedvlivalcRlreNlkdidaaveagkgAkvvtvhifi
++++ei+k++ e +v++++l++N ++++ a+ +g v ++ +f
Y71G12B.10 72 ADHNEIVKKHRRFE---GVSYPVLVPNAAGLKNALATG---VVEEIAVFG 115
aaSdlglkyklvkdrdevleraeeavkaAreagldVeGvatyvScvfscE
aaSd++ ++ + + +l+++ e+ k A e ++V+G yvS v++c+
Y71G12B.10 116 AASDAFSLKNVNSNVEDSLKKLMEVTKIALENNIRVRG---YVSVVVGCP 162
dasrtdleflleiaekaveaGatrENPiIiniaDTvGyltPneaadlisa
+ +++ +e ++++aek+ e G+++ ++++DT+G++t + +++++ +
Y71G12B.10 163 YQGAVQPEMVARVAEKLLESGCYE-----VSLGDTIGVGTVKTVSKMLDT 207
lrarvpnidkaeievHcHnDlGmAvANslaAveAGAdrvdgtvnGlGGCP
+ + vp ++vH+H+++G+A AN+l +e G + d++++GlGGCP
Y71G12B.10 208 VLKSVP---AEKLAVHFHDTYGQALANVLISIEKGIRSADSSIAGLGGCP 254
YaqERAGNaalEelvaamllrrlgidtGvTkldlqklrdlsalvarasgr
Ya +++GN a+E+l++ l++ g++tG ++l k+ +++ + +a g
Y71G12B.10 255 YAKGATGNLATEDLLYF--LKGNGFETG---VNLDKVVETAKWFNEAAGY 299
aippnkpivG<-*
++ vG
Y71G12B.10 300 ---DKWSRVG 306