Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y71G12B.17
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Query:  Y71G12B.17  CE27026    status:Partially_confirmed TR:Q95XP0 protein_id:AAK73916.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
IP_trans Phosphatidylinositol transfer protein          285.6    4.9e-82   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IP_trans   1/1     106   356 ..     1   256 []   285.6  4.9e-82

Alignments of top-scoring domains:
IP_trans: domain 1 of 1, from 106 to 356: score 285.6, E = 4.9e-82
                   *->mLiKEYrilLPlsvdEYqvaQLYmiakkSreeshGegsGVEilaNeP
                      m +KEYri+LPl+vdE+  + LY +   Sr+e++G g+GVE l+ e
  Y71G12B.17   106    MIVKEYRIPLPLTVDEFERGLLYAVSACSRNETGG-GEGVEFLVQED 151

                   Yedg...PGg..kGQYThKiYHvgskiPawirmllPkgALevhEeawnAY
                   ++  + +PG + +G YT+KiY ++sk P  ++ llP  A ++ Ee+wnAY
  Y71G12B.17   152 FTSNtlrPGQtvSGTYTKKIYRLRSKAPWVLQKLLPPEAFVIYEESWNAY 201

                   PytrTrytcp.ymvekFsieiETyykpDlGqqeNVfnLsgkdkktriidy
                   Py++T+ t+p+ym++ F   iET +++D+G  eN   L+g +k  r+i+
  Y71G12B.17   202 PYCKTVLTNPgYMKDNFHQIIETIHLDDNGSSEN--PLDGPEK--REIVF 247

                   iDivkrdqvasgdYkaeEDPklfkSvkTgRGPLgddWkkelaktgdlplM
                   iDi++ d    ++Y +e D +lf  ++ +RGPL +dW  e+      p+M
  Y71G12B.17   248 IDIADNDIFGTKNYEKEKDARLFEAETVERGPLDEDWIDEH---D--PVM 292

                   cAYKLckVeFryWGlQtkvEkFIhdvalrrvmlraHRQawcWqDeWtdLt
                   c YKL+   F++ GlQ  vEk +h++   rv+  +HR a+  +D W++++
  Y71G12B.17   293 CCYKLVSCHFKWTGLQRMVEKTVHKQ-YPRVFGLMHRDAYVLLDNWFNMS 341

                   meDIRrLEeetareL<-*
                   me IR+ E+ t   L
  Y71G12B.17   342 MESIREYERATGDIL    356



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