Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y71G12B.23
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y71G12B.23  CE27027    status:Partially_confirmed TR:Q95XN9 protein_id:AAK73924.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
UPF0073        Uncharacterised protein family (Hly-II    88.7      3e-24   1
DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-pro     5.6          9   1
Mov34          Mov34/MPN/PAD-1 family                     4.3        9.7   1
invertase_neut Plant neutral invertase                    1.4        8.6   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
invertase_neut   1/1       1    21 [.     1    21 [.     1.4      8.6
Mov34            1/1      96   112 ..   104   120 .]     4.3      9.7
DNA_gyraseA_C    1/1     287   303 ..     1    17 [.     5.6        9
UPF0073          1/1     374   582 ..     1   244 []    88.7    3e-24

Alignments of top-scoring domains:
invertase_neut: domain 1 of 1, from 1 to 21: score 1.4, E = 8.6
                   *->kksleaqeiedeAWrLlLrka<-*
                      +ks+e   ie  A+r+++  +
  Y71G12B.23     1    MKSPESADIELKARRIAYQMS    21

Mov34: domain 1 of 1, from 96 to 112: score 4.3, E = 9.7
                   *->SevDvhtqelyqryipe<-*
                      ++ Dv+++e++ +++++
  Y71G12B.23    96    TSPDVEINEKNDKIWEN    112

DNA_gyraseA_C: domain 1 of 1, from 287 to 303: score 5.6, E = 9
                   *->eddlllvTsnGyvkRtp<-*
                      +d++++vTs+G+++ tp
  Y71G12B.23   287    TDNVITVTSRGRIVATP    303

UPF0073: domain 1 of 1, from 374 to 582: score 88.7, E = 3e-24
                   *->FswhnEtaNiwTHLiGailfiillvllvvyaslpngssapsalkvva
                       + h+ +aN ++H iG+   i+ + +++  ++ +++     ++++
  Y71G12B.23   374    PTSHEHVANTVSHAIGIGPTILVFYYFMCAYA-HRD-----LQHI-- 412

                   WvfsifgvsafllllaStlyHtf.......schsekakkifrklDyaGIy
                     ++i+g+  +ll+++St yH  +   ++++ h++ +++ ++++D a+Iy
  Y71G12B.23   413 -LMIIYGIFTTLLFTSSTVYHFCellfrqqNKHRK-LRYYLHICDRAAIY 460

                   llIaGSytPil...yyafrgplchtilriiyiwilailGilaivvslwdk
                   l+Ia+SytP+l+ +++++  p  +  ++   iw+ ailGil+
  Y71G12B.23   461 LFIAASYTPWLtlrHCGL--PGLNLKWM---IWVFAILGILY-------- 497

                   FsepkfRpvravffkrfrklslglygvmgwlhviaikglsealsriglll
                               f++r++ l ++ly+++ +   +ai++    ++r+gl +
  Y71G12B.23   498 ---------QYNFHERYKTLETILYILIAAGPSVAIFT---MNDRTGLEW 535

                   lvlggvlYtvGavFYaariPERwfpgkfdiwGhSHqifHlFVvlaallHf
                   +  gg++Y vG++F+ ++     +   f+     H+i+HlFV+l+a +H
  Y71G12B.23   536 MMTGGMMYAVGVFFFKLD-----GIVAFA-----HAIWHLFVLLGASCHT 575

                   vaillyy<-*
                   +a++ ++
  Y71G12B.23   576 YAVYAFL    582



[DB home][top]