Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H10A.1a
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Query: Y71H10A.1a CE28266 phosphofructokinase status:Partially_confirmed TR:Q9TZL8 protein_id:AAC67416.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PFK Phosphofructokinase 781.4 1.3e-285 2
OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal do 5.1 1.4 1
POR_N Pyruvate flavodoxin/ferredoxin oxidoredu 3.9 5.3 1
DUF366 Domain of unknown function (DUF366) 2.4 6.7 1
Ca_channel_B Dihydropyridine sensitive L-type calcium 0.4 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
POR_N 1/1 69 82 .. 1 14 [. 3.9 5.3
DUF366 1/1 284 304 .. 1 21 [. 2.4 6.7
PFK 1/2 46 356 .. 1 312 [] 602.1 5.4e-220
Ca_channel_B 1/1 364 394 .. 1 30 [. 0.4 8
OKR_DC_1_N 1/1 635 658 .. 113 139 .] 5.1 1.4
PFK 2/2 446 724 .. 12 312 .] 170.3 6.2e-62
Alignments of top-scoring domains:
POR_N: domain 1 of 1, from 69 to 82: score 3.9, E = 5.3
*->eaaiaagcdviaaY<-*
++ai++gc+v+ +Y
Y71H10A.1a 69 RMAIYCGCKVYLIY 82
DUF366: domain 1 of 1, from 284 to 304: score 2.4, E = 6.7
*->mevmslliikDRRldYdGsaI<-*
++ + ++i+ + +d dG+aI
Y71H10A.1a 284 GQRLNIIIVAEGAIDRDGKAI 304
PFK: domain 1 of 2, from 46 to 356: score 602.1, E = 5.4e-220
*->KkIgVLTSGGDApGMNAAiRAVVRsAiaeGleVygIyeGYaGLvaGG
++ TSGGD++GMN A+R+++R+Ai+ G++Vy+IyeGY+G+++GG
Y71H10A.1a 46 RTLAIYTSGGDSQGMNSAVRSITRMAIYCGCKVYLIYEGYEGMIEGG 92
dnIkqlewesVsdiiqrGGTilgSARcpEFrerEGRlkAaenLkkhGIda
d Ik+++w++Vsdiiq GGTi+gSAR+ EFr+rEGRlkAa nL+ +GI
Y71H10A.1a 93 DFIKEATWNTVSDIIQQGGTIIGSARSSEFRTREGRLKAATNLINRGIGR 142
LVVIGGDGSytGAdlLteehgsLleeLvkeGkiteeevakyqylnivGlp
LV IGGDGS+tGA++++ e+ +L++eLvk+ ++t +++k y+ ivGl+
Y71H10A.1a 143 LVCIGGDGSLTGANTFRLEWTDLVQELVKNQRVTAAAAKKIPYIQIVGLV 192
GTIDNDisGTDyTIGfdTAlntiveaIDrIrdTAsSHqRtFVVEVMGRhC
G+IDND++GTD+TIG+d+Al++i+ ID+ +TA+SHqR+FV+EVMGRhC
Y71H10A.1a 193 GSIDNDFCGTDMTIGTDSALQRIISSIDAVVATAQSHQRAFVIEVMGRHC 242
GdlALvaGiAgGADyIvIPEapApedfweeelanrlkrgrerGKrhnIvi
G+lALva++A+ AD+ +IPE pApe+ w++ l+++l++ r+ G r+nI+i
Y71H10A.1a 243 GYLALVAALASEADFCFIPEWPAPEN-WRDVLCDKLSQMRSEGQRLNIII 291
VAEgaidkqlkpitseavkklkvagLgldtRvTVLGHvQRGGtPtAfDRi
VAEgaid+++k+it+e+vk ++++L++dtRvT+LGHvQRGG P+AfDR
Y71H10A.1a 292 VAEGAIDRDGKAITAEDVKTAVKEKLKYDTRVTILGHVQRGGAPSAFDRL 341
LASrmGaeAVeaLLe<-*
L+ rmGaeAV aL+e
Y71H10A.1a 342 LGCRMGAEAVFALME 356
Ca_channel_B: domain 1 of 1, from 364 to 394: score 0.4, E = 8
*->vvPsmRPvvLv.GPsLKGYEvtDmmqKAlFD<-*
v s+ v+v+ P LK E t m+qKA+ D
Y71H10A.1a 364 CVISIDGNVMVrVPLLKCVERTQMVQKAMAD 394
OKR_DC_1_N: domain 1 of 1, from 635 to 658: score 5.1, E = 1.4
*->vhffeyalegdaedyarqietAarnrY<-*
++++++ + d++++ +++e++a+ rY
Y71H10A.1a 635 FTVQDLSD--DVDVILSKMEVGAK-RY 658
PFK: domain 2 of 2, from 446 to 724: score 170.3, E = 6.2e-62
*->ApGMNAAiRAVVRsAiaeGleVygIyeGYaGLvaGGdnIkqlewesV
A GMNAA+R+ VR+A+++ + VygI + ++GL +G kq w +V
Y71H10A.1a 446 AGGMNAAVRSYVRMALYHQCTVYGIEDSFEGLANG--SFKQFKWSDV 490
sdiiqrGGTilgSARcpEFrerEGRlkAaenLkkhGIdaLVVIGGDGSyt
++ GG +lg+ + ++ + a++Lkkh I aL +GG y+
Y71H10A.1a 491 TNWAMNGGSFLGT--QKSLPTEKTMPQLAAQLKKHNIQALLLVGGFEAYH 538
GAdlLteehgsLleeLvkeGkiteeevakyqyl..nivGlpGTIDNDisG
+L e +ky + + + p TI N ++G
Y71H10A.1a 539 STIILAENR------------------EKYPEFciPMCVIPCTISNNVPG 570
TDyTIGfdTAlntiveaIDrIrdTAs.SHqRtFVVEVMGRhCGdlALvaG
T G dTA+n i+++ID+I+ A++ R+F+VE MG +CG+lA ++
Y71H10A.1a 571 TMVSLGSDTAINEICQMIDKIKQSATgTKRRVFIVETMGGYCGYLATLSA 620
iAgGADyIvIPEapApedfweeel...anrlkrgrerGKrhnIviVAEga
+++GAD I E+p f +l+++++++ e G + +v+ E a
Y71H10A.1a 621 LSSGADNAYIFEEP----FTVQDLsddVDVILSKMEVGAKRYLVVRNEWA 666
idkqlkpitseavkklkvagLgldtRvTVLGHvQRGGtPtAfDRiLASrm
+ ++ + + ++ + tRv+VLGHvQ GG+Pt+fDR ++++
Y71H10A.1a 667 DKNLTTDFVQNLFDSEGKKN--FTTRVNVLGHVQQGGSPTPFDRNMGTKL 714
GaeAVeaLLe<-*
+a+A e LL
Y71H10A.1a 715 AARALEFLLI 724