Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y71H2AL.1
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Query:  Y71H2AL.1  CE27032    status:Partially_confirmed TR:Q9N2Y1 protein_id:AAF60872.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
efhand   EF hand                                         65.5    3.2e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
efhand     1/2     115   143 ..     1    29 []    32.4  4.6e-07
efhand     2/2     156   184 ..     1    29 []    36.8  2.8e-08

Alignments of top-scoring domains:
efhand: domain 1 of 2, from 115 to 143: score 32.4, E = 4.6e-07
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +l+ aF ++D +++G+I+++Ef+++l+++
   Y71H2AL.1   115    KLRFAFTMYDLNKSGTITKDEFQDILAMM    143

efhand: domain 2 of 2, from 156 to 184: score 36.8, E = 2.8e-08
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       +++ ++e+D+DgDG+I+f+Ef++a++k+
   Y71H2AL.1   156    IADRTMREADRDGDGFITFQEFCNAMEKT    184



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