Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H2AL.1
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Query: Y71H2AL.1 CE27032 status:Partially_confirmed TR:Q9N2Y1 protein_id:AAF60872.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
efhand EF hand 65.5 3.2e-16 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
efhand 1/2 115 143 .. 1 29 [] 32.4 4.6e-07
efhand 2/2 156 184 .. 1 29 [] 36.8 2.8e-08
Alignments of top-scoring domains:
efhand: domain 1 of 2, from 115 to 143: score 32.4, E = 4.6e-07
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+l+ aF ++D +++G+I+++Ef+++l+++
Y71H2AL.1 115 KLRFAFTMYDLNKSGTITKDEFQDILAMM 143
efhand: domain 2 of 2, from 156 to 184: score 36.8, E = 2.8e-08
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+++ ++e+D+DgDG+I+f+Ef++a++k+
Y71H2AL.1 156 IADRTMREADRDGDGFITFQEFCNAMEKT 184