Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H2AM.12
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Query: Y71H2AM.12 CE27318 status:Partially_confirmed TR:Q9BL44 protein_id:AAK29982.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ras Ras family 135.2 4.6e-39 2
ABC_tran ABC transporter 4.7 3.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC_tran 1/1 6 23 .. 1 18 [. 4.7 3.3
ras 1/2 8 129 .. 1 132 [. 129.2 2.7e-37
ras 2/2 144 159 .. 151 166 .. 6.0 1.1
Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 6 to 23: score 4.7, E = 3.3
*->GevlalvGpNGaGKSTLL<-*
++++vG++GaGK+ LL
Y71H2AM.12 6 TVKVVVVGESGAGKTALL 23
ras: domain 1 of 2, from 8 to 129: score 129.2, E = 2.7e-37
*->KlVliGDsGVGKSsLliRFtdnkFveeYipTIGvDFytktvevD.Gk
K+V++G+sG GK++Ll F dn+F ++ +TIG+DF+ k+v +++G+
Y71H2AM.12 8 KVVVVGESGAGKTALLTCFLDNTFETDPLTTIGIDFKHKIVQLNdGQ 54
tvkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvkkWlee
++Lq+WDTAGQERFr l+paY R A ++LLV D ++ e++ +W
Y71H2AM.12 55 SIRLQLWDTAGQERFRQLAPAYIRSARVALLVIDLSDENCVEHLIRWKGI 104
ilrhadkdenvpivLVGNKcDLeddedleltegqkR<-*
i++ ++ + + ++VGNK DL e kR
Y71H2AM.12 105 IDKNKS--DFTSTIIVGNKHDLVS-E--------KR 129
ras: domain 2 of 2, from 144 to 159: score 6.0, E = 1.1
*->FmETSAKtntNVeeaF<-*
++ETSAK ++N+++ F
Y71H2AM.12 144 YIETSAKMRKNIKKLF 159