Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y71H2AM.5
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Query:  Y71H2AM.5  CE22939    status:Confirmed TR:Q9BL34 protein_id:AAK29974.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
COX6B        Cytochrome oxidase c subunit VIb            72.3    7.3e-19   1
fucose_iso_C L-fucose isomerase, C-terminal domain        4.6        1.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
fucose_iso_C   1/1      81    95 ..   221   235 .]     4.6      1.8
COX6B          1/1      44   118 ..     1    78 []    72.3  7.3e-19

Alignments of top-scoring domains:
fucose_iso_C: domain 1 of 1, from 81 to 95: score 4.6, E = 1.8
                   *->GqDYRACqnyGPlYK<-*
                      GqDY+ C+ +  +YK
   Y71H2AM.5    81    GQDYKPCKFFQNVYK    95

COX6B: domain 1 of 1, from 44 to 118: score 72.3, E = 7.3e-19
                   *->knknlqtapfdsRFPnqNQTkhCwQsYvDYhrCvkAmtaKGeDfspC
                      k  +l  ap d+RFP+    + C+  YvD+hrC       G D  pC
   Y71H2AM.5    44    KKDLLWAAPYDARFPQVRKQRQCFAYYVDFHRCNE---LMGQDYKPC 87

                   kvFwkvYkSLCPleWVekWDdqReeGtFpGk<-*
                   k F  vYk  CP  W e+WD+   eG Fp+k
   Y71H2AM.5    88 KFFQNVYKDFCPGFWTERWDELLSEGRFPAK    118



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