Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H2AM.5
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Query: Y71H2AM.5 CE22939 status:Confirmed TR:Q9BL34 protein_id:AAK29974.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
COX6B Cytochrome oxidase c subunit VIb 72.3 7.3e-19 1
fucose_iso_C L-fucose isomerase, C-terminal domain 4.6 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fucose_iso_C 1/1 81 95 .. 221 235 .] 4.6 1.8
COX6B 1/1 44 118 .. 1 78 [] 72.3 7.3e-19
Alignments of top-scoring domains:
fucose_iso_C: domain 1 of 1, from 81 to 95: score 4.6, E = 1.8
*->GqDYRACqnyGPlYK<-*
GqDY+ C+ + +YK
Y71H2AM.5 81 GQDYKPCKFFQNVYK 95
COX6B: domain 1 of 1, from 44 to 118: score 72.3, E = 7.3e-19
*->knknlqtapfdsRFPnqNQTkhCwQsYvDYhrCvkAmtaKGeDfspC
k +l ap d+RFP+ + C+ YvD+hrC G D pC
Y71H2AM.5 44 KKDLLWAAPYDARFPQVRKQRQCFAYYVDFHRCNE---LMGQDYKPC 87
kvFwkvYkSLCPleWVekWDdqReeGtFpGk<-*
k F vYk CP W e+WD+ eG Fp+k
Y71H2AM.5 88 KFFQNVYKDFCPGFWTERWDELLSEGRFPAK 118