Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y71H2AM.13
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Query: Y71H2AM.13 CE22953 status:Partially_confirmed TR:Q9BL43 protein_id:AAK29968.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
COesterase Carboxylesterase 595.5 3.2e-175 1
RLI Possible metal-binding domain in RNase L i 7.9 1.5 1
DUF589 Family of unknown function (DUF589) 3.2 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF589 1/1 215 233 .. 158 176 .] 3.2 8.8
RLI 1/1 420 433 .. 1 14 [. 7.9 1.5
COesterase 1/1 1 533 [. 1 592 [] 595.5 3.2e-175
Alignments of top-scoring domains:
DUF589: domain 1 of 1, from 215 to 233: score 3.2, E = 8.8
*->LSVfPVtpeeWkrileLag<-*
LS++PV+ + ++ + +++g
Y71H2AM.13 215 LSISPVSRDLFQKVIPMGG 233
RLI: domain 1 of 1, from 420 to 433: score 7.9, E = 1.5
*->mriAvidydrCdPK<-*
+ i+++ +d C+PK
Y71H2AM.13 420 TPIYMYSFDYCNPK 433
COesterase: domain 1 of 1, from 1 to 533: score 595.5, E = 3.2e-175
*->mglllllllllllllavvataptspedpvVeTsyvgGkvrGlrvkvd
mg+ ++ + +++++ + Tsy G+++G+r+ +
Y71H2AM.13 1 MGGTVSKHTTPHYPPSRQVL-----------TSY--GPIEGRRLIHE 34
ggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgvldATkygpaCpQ.
g +k+v+aF GIPYA+PP+G+LRF+ PqP +e+Wt+v++++++g++ +Q+
Y71H2AM.13 35 G-EKQVDAFQGIPYAAPPIGNLRFALPQP-HEKWTEVRETKSFGARGIQk 82
ndlgfpgfpLAlevmgsemwnkntgvsmSEDCLYLNVytPklasenk.kl
++ + + k+ + +SED L+LN++tP ++++n++++
Y71H2AM.13 83 DHVL---------------SPKTSP--QSEDNLTLNIFTPVWTPKNEtGF 115
PVmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVtiNYRLGalGFL
PV+ +IHGGGF+s+sa+ + d++++ ++++kdVVVVti+YRLG+lGF
Y71H2AM.13 116 PVILYIHGGGFVSDSAH--KYGDMSICQHLVTKDVVVVTIQYRLGFLGFW 163
stgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGAa
+tgds++p N++L+D+v AL+WV+eNI F+GDP+n+Tl+G+SAG+a
Y71H2AM.13 164 TTGDSSIP---DNVALHDMVFALKWVKENIGLFNGDPNNITLMGQSAGGA 210
SVsllllSppqsrgLFhrAIlqSGsalspwaits.pearnrakrlAkllG
SV++l++S p sr+LF+++I++ G+a ++wai ++p +n ++ A++ G
Y71H2AM.13 211 SVDFLSIS-PVSRDLFQKVIPMGGNASCSWAIHPrP--LNACRNRAQEIG 257
Cpgedst.elleCLRkksaeelldaqeklllldevgffpffaFgPvvdGd
++++t + +e LR+++a+++++a + ++++d +++ + gP +d
Y71H2AM.13 258 VFDGMNTlDWVEKLRELPADKFASALN-MEAVDTKTDPELL-IGPKYDNL 305
tpdaflpkdPeellkegnfnkvPlliGvtsdEGllflayll.dp.esadl
f+p + +el+ke ++ +P l+G+ + EGl f++++l+ +++
Y71H2AM.13 306 ----FIPRPVMELRKE--APMKPRLLGCAKSEGLVFAFFGLnTKhP---- 345
lslldnedlflellpellpgaselltpklreeiadalkeeYtdd.dd.ns
l+ + ++ l + l+p + + +++ +e+ + + d+
Y71H2AM.13 346 LHAVQQDV-SAILSEKLFPLKARDY--------QEKALEKLIEIgTDhSK 386
eesrealvdllsDylFvcpilrlaaarlakggapv.YlYrFdyrssfsfn
ee+++a+vdl +D++ +++i ++++ l +++++ Y+Y+Fdy++++
Y71H2AM.13 387 EEWQRAMVDLKGDSFLNVGIQQNVLDVLETQPSTPiYMYSFDYCNPK--- 433
qylinllwppwmgvsHgdelsYvFGnpls.k.lyteeeeklssrrmmryw
+y+i+ ++ p++ ++H++++sYv Gn+++++ +++ee++k++ ++ +r+w
Y71H2AM.13 434 AYGIMGFKLPFKDATHCTDISYVVGNHIVnSfDFNEEDYKMI-EITTRLW 482
tnFAktGnPN...ngessglpkWppytseeqkYyllntlltistk.lree
tnFAk+GnPN+++ +++ + kW+p t e + t++ + +++ ++
Y71H2AM.13 483 TNFAKYGNPNgegDDVAHLEEKWEPATIE-----SPQTHMALTLQpKLHH 527
dprkvkcafw<-*
+ + +
Y71H2AM.13 528 V----YKQGR 533