Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y73B6BL.1
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Query: Y73B6BL.1 CE29922 status:Partially_confirmed TR:Q95XC6 protein_id:AAK68589.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tyrosinase Common central domain of tyrosinase 59.0 1.4e-15 2
hemocyanin Hemocyanin, copper containing domain 12.0 0.035 1
DUF205 Domain of unknown function DUF 2.9 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tyrosinase 1/2 42 76 .. 102 138 .. 31.9 5e-08
hemocyanin 1/1 190 206 .. 280 296 .] 12.0 0.035
DUF205 1/1 192 206 .. 219 233 .] 2.9 9.7
tyrosinase 2/2 166 265 .. 265 379 .] 29.1 3e-07
Alignments of top-scoring domains:
tyrosinase: domain 1 of 2, from 42 to 76: score 31.9, E = 5e-08
*->vHesplFlpWHRwYLyfyEriLgklindptFAlPYWn<-*
+H +p+FlpWHR +L ++E +L+ + pt++lPYW+
Y73B6BL.1 42 AHWGPAFLPWHREFLRQFEIALQTEV--PTVTLPYWD 76
hemocyanin: domain 1 of 1, from 190 to 206: score 12.0, E = 0.035
*->DPvFYrlhkrIdnifqe<-*
DP FY+ h +Idn+ +
Y73B6BL.1 190 DPTFYMHHAFIDNLWEK 206
DUF205: domain 1 of 1, from 192 to 206: score 2.9, E = 9.7
*->viyrHReNIkRLlnG<-*
++y H++ I +L+++
Y73B6BL.1 192 TFYMHHAFIDNLWEK 206
tyrosinase: domain 2 of 2, from 166 to 265: score 29.1, E = 3e-07
*->neplHNpvHiwtGgntkynlPngisngedMgsfysaafDPIFylHHs
+e++H + H+w+Gg M ++++DP Fy HH+
Y73B6BL.1 166 FESMHGLSHVWVGG--------------FMYVIRVSPNDPTFYMHHA 198
NVDRlWsiW....kalggksFrtdfpeadwlishfrfydenpfppkrvkv
+ D lW+ +++++++ + + +++ ++h + ++pf+ ++
Y73B6BL.1 199 FIDNLWEKFrqnsQTREER--ENQWATKNCNDNHGFDVQMKPFTI-QNRD 245
rDcfdtsrpklGYdYedqptpw<-*
+ ++ + + Y Y+++ + +
Y73B6BL.1 246 GLSNQYT--DEWYEYQPVRHCS 265