Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y73F8A.35
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y73F8A.35 CE24655 status:Partially_confirmed TR:Q9NA43 protein_id:CAB60564.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF229 Protein of unknown function (DUF229) 393.6 2e-114 2
Spuma_A9PTase Spumavirus aspartic protease (A9) 4.0 8.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Spuma_A9PTase 1/1 451 468 .. 1 16 [. 4.0 8.9
DUF229 1/2 118 566 .. 52 561 .] 393.7 1.9e-114
DUF229 2/2 612 644 .. 530 561 .] 3.2 3.4
Alignments of top-scoring domains:
Spuma_A9PTase: domain 1 of 1, from 451 to 468: score 4.0, E = 8.9
*->IKGn..kLKGyWDSGAeI<-*
KGn +kL ++D+ A+I
Y73F8A.35 451 MKGNakKLQTHYDTRATI 468
DUF229: domain 1 of 2, from 118 to 566: score 393.7, E = 1.9e-114
*->CyykreikRkrdsaniygysklfklppkltqsvkvpvgiiegevefi
C r++ Rk+d+ n +g+++ +++ pv+ +ef+
Y73F8A.35 118 CKT-RCHWRKDDRTNFIGNWNSTPG----------PVD-----CEFL 148
rteCwsdfgkiyrkflqkDvfeflhdeerlriipksgdkrvktekstpke
+ C d++k y ++ h +iip+++ + +++ + +
Y73F8A.35 149 EAICLKDNLKVY---------GYMHS----QIIPTPP---ITPKVDVS-K 181
sdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGDNTf
++V ++ lDSl + ++ Rs+Pr ++++s+++ v+f++ NKVG+N++
Y73F8A.35 182 LQQYDVTVILLDSLAHAQALRSLPRAISYMTSHMSAVVFPYVNKVGENSR 231
pNLlplLtGkllEavkklidsegeaeancdlppskegclDkcpfIWKdFk
N++pl++Gk+lE+++k ++e +++ +++ + ++ + D+ + I+++F+
Y73F8A.35 232 SNGVPLWFGKSLEKLDKSLFDEEDVTVDWTHEYMCNEFKDNETSIFNEFR 281
daYGYaTafAEDwstagigtFnYlpdefkpGFkkqPtDhYlRPlllavE.
d GY+T++AEDw a +++ ++ ++GF ++P+DhY+RP+++a+E+
Y73F8A.35 282 DY-GYKTLLAEDW--AEGTLNFPN----CKGFDNPPIDHYMRPFQNALEr 324
.kqlkyrtrsglnlmyClgrrplhevllDylrqFlpryrdspdipfFgFf
++++ ++tr++l+ ++ r+ h++ll+yl +F+++y ++ F++
Y73F8A.35 325 pHHGEFITRNHLS--PGNLTREHHNTLLEYLSKFMNAYPNEK---KFSWI 369
WsnslsHddfnlasalDedllkyLkkleenGlldntivifmSDHGlRfGk
W ++l Hd+ n+ s++D+d++++L k+ e+ ldn++vi+m+DHG RfG
Y73F8A.35 370 WASHLGHDSMNGFSHADNDFYNFLVKHREK--LDNSFVILMGDHGPRFGA 417
lrrtsqGmlEERlPfmsillPpwlRnyekyPqaveNLelNahrLtTpFDl
r+t++G lE +Pf+ i++P+ lR k ++++ + Na++L+T++D
Y73F8A.35 418 NRKTVSGELEVHNPFLGISIPKALR---KTTEILSLMKGNAKKLQTHYDT 464
HaTLkhilnlsslsdkellrrtkaldclpsalprgiSLFlPiPdn.RtCs
+aT +il+ +s+ ++ +++ +k++ + +g S ++++Pd++R+C+
Y73F8A.35 465 RATILDILKYQSTTNFLDTEILKIPGE------KGFSFIRKQPDTpRNCK 508
tAgIpehwCtC..esykeiptndtkekalvrriAekvvdriNellkelnt
t +Ip ++C+C+ +++ e +++d l+ ++A++++ ++N++l+ +
Y73F8A.35 509 TMPIPIQYCLCkfNRTTESIHSD-----LAHSMAKALTAAVNTELENGK- 552
eeElltplCapLeLqkVe<-*
l + C +e + ++
Y73F8A.35 553 ----LQSRCIKMEYSIIL 566
DUF229: domain 2 of 2, from 612 to 644: score 3.2, E = 3.4
*->vvdriNellkelntee.ElltplCapLeLqkVe<-*
+++r+Ne+ ++ ++ +E ++p+C + + +V
Y73F8A.35 612 IIERVNEYGQTAHCIKsEYHRPYCFCRNQINVF 644