Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y73F8A.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y73F8A.1 CE25589 locus:pkd-2 status:Partially_confirmed TR:Q9U1S7 protein_id:CAB60565.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ion_trans Ion transport protein 115.7 8.8e-31 1
Herpes_UL49 Herpesvirus UL49 tegument protein 3.6 7.7 1
Peptidase_M50 Peptidase family M50 3.6 6.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Herpes_UL49 1/1 476 487 .. 1 12 [. 3.6 7.7
ion_trans 1/1 424 630 .. 1 228 [] 115.7 8.8e-31
Peptidase_M50 1/1 609 632 .. 170 193 .] 3.6 6.7
Alignments of top-scoring domains:
Herpes_UL49: domain 1 of 1, from 476 to 487: score 3.6, E = 7.7
*->qRAkPGaraias<-*
+R+k+G++++ s
Y73F8A.1 476 NRTKTGVNRVNS 487
ion_trans: domain 1 of 1, from 424 to 630: score 115.7, E = 8.8e-31
*->ileildyvftviFtlEmllkiialgfklhsriprkYlrspwnilDfl
i+e +++ f+++F++E+l+ i ++ ++Yl+ +wn++D++
Y73F8A.1 424 IFEGIFCGFILYFIFEELFAIGRHR--------LHYLTQFWNLVDVV 462
vvlpslislilflsgggsv.kl.ir.l....res.l.flalse.vsygil
++ s++++il+ ++ + + + ++++ ++ ++++++ se+++ +i
Y73F8A.1 463 LLGFSVATIILSVNRTKTGvNRvNSvIenglTNApFdDVTSSEnSYLNIK 512
svlrllRllRvLRllrllrrapglfefelrtlGWklqslgrslkslfnll
+ + ++ +++ ++++++++++ +++l +l+rs k+++ ++
Y73F8A.1 513 ACVVFVAWVK---VFKFISVNKT-----MSQL---SSTLTRSAKDIGGFA 551
lllllllfifaiigvqlfggelnkccnpingntnFdnfgeaflwlFqtlT
+++++++f+fa +g++ fg ++n ++ ++l++++
Y73F8A.1 552 VMFAVFFFAFAQFGYLCFGTQ----------IADYSNLYNSAFALLRLIL 591
teGwgdimpdtlagtvlgkiyfvifiilggflllNlfiavi<-*
+++ ++++ ++++g +f++++++++f+llN+f+a+i
Y73F8A.1 592 GDFNFSALESC--NRFFGPAFFIAYVFFVSFILLNMFLAII 630
Peptidase_M50: domain 1 of 1, from 609 to 632: score 3.6, E = 6.7
RF xxxxxxxxxxxxxxxxxxxxxxxx
*->aekyaalvglalllllfllllfnd<-*
a+++a+++++ ++ll ++l+++nd
Y73F8A.1 609 AFFIAYVFFVSFILLNMFLAIIND 632