Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y73F8A.35
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Query:  Y73F8A.35  CE24655    status:Partially_confirmed TR:Q9NA43 protein_id:CAB60564.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DUF229        Protein of unknown function (DUF229)      393.6     2e-114   2
Spuma_A9PTase Spumavirus aspartic protease (A9)           4.0        8.9   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Spuma_A9PTase   1/1     451   468 ..     1    16 [.     4.0      8.9
DUF229          1/2     118   566 ..    52   561 .]   393.7 1.9e-114
DUF229          2/2     612   644 ..   530   561 .]     3.2      3.4

Alignments of top-scoring domains:
Spuma_A9PTase: domain 1 of 1, from 451 to 468: score 4.0, E = 8.9
                   *->IKGn..kLKGyWDSGAeI<-*
                       KGn +kL  ++D+ A+I
   Y73F8A.35   451    MKGNakKLQTHYDTRATI    468

DUF229: domain 1 of 2, from 118 to 566: score 393.7, E = 1.9e-114
                   *->CyykreikRkrdsaniygysklfklppkltqsvkvpvgiiegevefi
                      C   r++ Rk+d+ n +g+++ +++          pv+     +ef+
   Y73F8A.35   118    CKT-RCHWRKDDRTNFIGNWNSTPG----------PVD-----CEFL 148

                   rteCwsdfgkiyrkflqkDvfeflhdeerlriipksgdkrvktekstpke
                   +  C  d++k y         ++ h     +iip+++   + +++  + +
   Y73F8A.35   149 EAICLKDNLKVY---------GYMHS----QIIPTPP---ITPKVDVS-K 181

                   sdkpSVlilGlDSlSrmnfrRsMPrTvkflesnlgwvefqGYNKVGDNTf
                      ++V ++ lDSl + ++ Rs+Pr  ++++s+++ v+f++ NKVG+N++
   Y73F8A.35   182 LQQYDVTVILLDSLAHAQALRSLPRAISYMTSHMSAVVFPYVNKVGENSR 231

                   pNLlplLtGkllEavkklidsegeaeancdlppskegclDkcpfIWKdFk
                    N++pl++Gk+lE+++k  ++e +++ +++  + ++ + D+ + I+++F+
   Y73F8A.35   232 SNGVPLWFGKSLEKLDKSLFDEEDVTVDWTHEYMCNEFKDNETSIFNEFR 281

                   daYGYaTafAEDwstagigtFnYlpdefkpGFkkqPtDhYlRPlllavE.
                   d  GY+T++AEDw  a +++  ++    ++GF ++P+DhY+RP+++a+E+
   Y73F8A.35   282 DY-GYKTLLAEDW--AEGTLNFPN----CKGFDNPPIDHYMRPFQNALEr 324

                   .kqlkyrtrsglnlmyClgrrplhevllDylrqFlpryrdspdipfFgFf
                   ++++ ++tr++l+   ++  r+ h++ll+yl +F+++y ++     F++
   Y73F8A.35   325 pHHGEFITRNHLS--PGNLTREHHNTLLEYLSKFMNAYPNEK---KFSWI 369

                   WsnslsHddfnlasalDedllkyLkkleenGlldntivifmSDHGlRfGk
                   W ++l Hd+ n+ s++D+d++++L k+ e+  ldn++vi+m+DHG RfG
   Y73F8A.35   370 WASHLGHDSMNGFSHADNDFYNFLVKHREK--LDNSFVILMGDHGPRFGA 417

                   lrrtsqGmlEERlPfmsillPpwlRnyekyPqaveNLelNahrLtTpFDl
                    r+t++G lE  +Pf+ i++P+ lR   k  ++++  + Na++L+T++D
   Y73F8A.35   418 NRKTVSGELEVHNPFLGISIPKALR---KTTEILSLMKGNAKKLQTHYDT 464

                   HaTLkhilnlsslsdkellrrtkaldclpsalprgiSLFlPiPdn.RtCs
                   +aT  +il+ +s+ ++ +++ +k++ +      +g S ++++Pd++R+C+
   Y73F8A.35   465 RATILDILKYQSTTNFLDTEILKIPGE------KGFSFIRKQPDTpRNCK 508

                   tAgIpehwCtC..esykeiptndtkekalvrriAekvvdriNellkelnt
                   t +Ip ++C+C+ +++ e +++d     l+ ++A++++ ++N++l+  +
   Y73F8A.35   509 TMPIPIQYCLCkfNRTTESIHSD-----LAHSMAKALTAAVNTELENGK- 552

                   eeElltplCapLeLqkVe<-*
                       l + C  +e + ++
   Y73F8A.35   553 ----LQSRCIKMEYSIIL    566

DUF229: domain 2 of 2, from 612 to 644: score 3.2, E = 3.4
                   *->vvdriNellkelntee.ElltplCapLeLqkVe<-*
                      +++r+Ne+  ++ ++ +E ++p+C +  + +V
   Y73F8A.35   612    IIERVNEYGQTAHCIKsEYHRPYCFCRNQINVF    644



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