Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y75B12B.2
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Query: Y75B12B.2 CE20371 locus:cyp-7 Peptidyl-prolyl cis-trans isomerases status:Confirmed SW:P52015 protein_id:CAA21760.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr 376.1 3.6e-109 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pro_isomerase 1/1 5 171 .] 1 179 [. 376.1 3.6e-109
Alignments of top-scoring domains:
pro_isomerase: domain 1 of 1, from 5 to 171: score 376.1, E = 3.6e-109
*->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfg...k
+v+FDiti gkp GrIv+eL++d vPkTaeNFraLctgekg+g+++k
Y75B12B.2 5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGksgK 51
klfYkGstFHRVIpnFMiQGGDftagnqGtGGkSIYGekFkDEnfnlkHd
+l++kGs+FHR+Ip FMiQGGDft+gn GtGG+SIYGekF+DEnf+ kH+
Y75B12B.2 52 PLHFKGSKFHRIIPEFMIQGGDFTRGN-GTGGESIYGEKFPDENFKEKHT 100
rhepGtLSMANaGdpnTNGSQFFItTvktpwLDGKHVvdfGYAVFGkVve
+ pG+LSMANaG pnTNGSQFF +Tvkt+wLDGKHV VFG Vve
Y75B12B.2 101 G--PGVLSMANAG-PNTNGSQFFLCTVKTAWLDGKHV------VFGRVVE 141
GmdVVkkIenvgtdeyGksgdkpskeVkIadcgql<-*
G+d+V k+e g++ sg p++e+ Iadcgql
Y75B12B.2 142 GLDIVSKVEGNGSS----SG-TPKSECLIADCGQL 171