Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y75B8A.3
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Query:  Y75B8A.3  CE31859   Carboxylesterases status:Partially_confirmed TR:Q9XW75 protein_id:CAA22094.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
COesterase Carboxylesterase                             343.3    2.6e-99   1
Adeno_PIX  Adenovirus hexon-associated protein (IX)       4.8        3.6   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Adeno_PIX    1/1     240   259 ..     1    19 [.     4.8      3.6
COesterase   1/1      28   760 ..     1   592 []   343.3  2.6e-99

Alignments of top-scoring domains:
Adeno_PIX: domain 1 of 1, from 240 to 259: score 4.8, E = 3.6
                   *->Msgnte.NaasfeGevrtcF<-*
                      Ms n  + a  ++G+v++c+
    Y75B8A.3   240    MSQNLFnQAIVQSGSVYSCY    259

COesterase: domain 1 of 1, from 28 to 760: score 343.3, E = 2.6e-99
                   *->mglllllllllllllavvataptspedpvVeTsyvgGkvrGlrvkvd
                      +++    ++  +++ +v+++        +V++              +
    Y75B8A.3    28    QNQQSNYVTVSCSQGSVQGR--------QVNLG---NDQSQ----LY 59

                   ggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgvldATkygpaCpQ.
                    g  + +aF GIPY ++PvG+LR ++PqP+ +  t   dAT ++p+CpQ
    Y75B8A.3    60 SG--QANAFTGIPYCQAPVGNLRLQPPQPLNQFNTTLHDATYFRPKCPQl 107

                   ndlgfpgfpLAlevmgsemwnkntgvsmSEDCLYLNVytPklasenkklP
                   n  g                 ++t     EDCLYLNVytP+  ++n++l+
    Y75B8A.3   108 NA-G-----------------GPT----NEDCLYLNVYTPQAGNTNANLS 135

                   VmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVtiNYRLGalGFLs
                   V+V I G   +s ++ + ++ + ++   ++++ +VVVt++YR GalGF++
    Y75B8A.3   136 VLVLIDGSNGFSNGG-CDQNQEKGIISNLVQRQIVVVTMQYRIGALGFFT 184

                   tgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGAaS
                   t +++++    N+G+lDQv+A+rW++ +I +FGG+P+++T++G+  GA++
    Y75B8A.3   185 TYTNSVQ---SNLGMLDQVQAMRWIKTEIVNFGGNPNQITVAGQDDGACA 231

                   VsllllSppqsrgLFhrAIlqSGsalspwaits.pearnrakrlAkllGC
                   Vs++ lS p+s++LF++AI+qSGs++s +  t+ + + n   ++ +
    Y75B8A.3   232 VSAHCLS-PMSQNLFNQAIVQSGSVYSCYNPTPaV-PTNPQVQVTTPRPM 279

                   pgedst....elleCLRkksaeelldaqeklllldevgffpff......a
                    + ++t+ +++ ++   +  ++ + ++   +++  ++++++++  ++
    Y75B8A.3   280 YDQSNTgygnAGYQNNYGYQPQPITSTSSYNSANAQYDDPSQQlaqtlcN 329

                   FgP.....................................vvdGdtpdaf
                     P++ +++++++ ++  ++ + +   ++++++++ +   v d      f
    Y75B8A.3   330 ISPdqwnngqtqniqncmknytvdffvnqqpggpnatwmiVRDTS----F 375

                   lpkdPeellkegnfnkvPlliGvtsdEGllflayll.dp.esadllslld
                   lp + + l  +   +++P++iG+++dE +  +++l +  + s d+++l+d
    Y75B8A.3   376 LPGSIDSLTTR--RPNIPIIIGTVQDEDADYAFKLInTGkGS-DPNNLDD 422

                   ned...............................................
                   ++++  ++++ ++++ ++ ++  +++ + +++  ++++ + +++ +++++
    Y75B8A.3   423 WIFdfarknklnqtqanqvsniisnnygvntgalgqqgaqvnsqyqgsgt 472

                   ..................................................
                   +++ +++ +++++++++++ + +++++++++++   ++   +++++ +++
    Y75B8A.3   473 gqqvnnqyqntqgqqtnnqyqydqggqqtnnqgayyggvvagqqttyqnq 522

                   ..................................................
                   ++++++ ++++++ +++ ++++++++++   +++++++ +++++++++++
    Y75B8A.3   523 nqnqqgvqrdqgsyqnqysnqnqqqpreyllsnhnqnqygssgqnqnqnq 572

                   ..........lflellpellpgaselltpklreeiadalkeeYtdd.ddn
                   +++++ ++++++  + +++   ++    +++   ++ + ++   ++  d+
    Y75B8A.3   573 qtsnqyqnngVYTNVTQYSNVNNNYGYQRDQPATTGMQTVNGNGNGvTDF 622

                   seesrealvdllsDylFvcpilrlaaarlakggapvYlYrFdyrssfsfn
                   s+     ++ + sD       +  +++++++g + v +Y+F+++s+  ++
    Y75B8A.3   623 SQLR--TISSIASDQSTSLT-TTQIQSYMQNGARHVRVYQFTHVSE--VG 667

                   qylinllwppwmgvsHgdelsYvFGnpls.k.lyteeeeklssrrmmryw
                    + + + + +w+ v  g + +++  +  + ++ +++ +++++++ m + w
    Y75B8A.3   668 RNTVPDTGANWKPVFKGQDMYFITMSETIwTnSNYTPQDRQVANQMGQRW 717

                   tnFAktGnPNngessglpkWppytseeqkYyllntlltistk.lreedpr
                   ++F+ktGn          +W++ ++ + +Y++lnt  t++++    ++
    Y75B8A.3   718 SDFVKTGNV--------ANWDTTNQQNYNYCNLNTQATQQAQyGQQAR-- 757

                   kvkcafw<-*
                       +++
    Y75B8A.3   758 ----RVF    760



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