Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y76A2B.6
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Query:  Y76A2B.6  CE31845   CD36 family status:Partially_confirmed TN:CAD45598 protein_id:CAA21747.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
CD36     CD36 family                                    231.8      1e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CD36       1/1      29   495 ..     1   567 []   231.8    1e-65

Alignments of top-scoring domains:
CD36: domain 1 of 1, from 29 to 495: score 231.8, E = 1e-65
                   *->crlnryliilaviga..vfavgGlivivNvfpsIidsqvkknvvLrp
                      +++++  i +++ig+++++++g li+   v+p+ ++s+++ n +L +
    Y76A2B.6    29    MSCCQLVISAVLIGLgsFLLFGSLITHTVVVPKVVKSSIEENSRLVN 75

                   gtDGsLndaffsWekpPvpvymsFYiFNVTNPdEilnnGakPnVkEvGPY
                   g+     +  + W+ p +++++  Y++   NPdE++n Ga P+V   GPY
    Y76A2B.6    76 GS-----IMWEKWAMPEYKIRFNMYVYSTKNPDEFMN-GAIPEVTGSGPY 119

                   tyrErteqKenitFs.dNdTvmyyennktyvFePdlSvgdekydDkivfP
                   +++    ++en + s +N+Tv y +   ty F++  S+ ++ +   i +P
    Y76A2B.6   120 VFDK---KMENRVVSaENGTVKYRR-FFTYNFNEQESCQTCILGNRIWVP 165

                   NiGFqVGiDpvltavetmldpplqatltlkliinlglkilgekGtLilFN
                   N+       ++   ve    + +         ++++ + l +     +F
    Y76A2B.6   166 NM-------IYQKFVEAASTEGM---------KAAATTLLSQT----AF- 194

                   VPvnrtVgelLwsGYeDPilsvAHSgeFvnlfndeflGkgavvfvtkpkp
                     + + V elL++GY+DP         F+ ++         +v   ++++
    Y76A2B.6   195 --LEVEVEELLFEGYKDP---------FLDKVC--EIPFMNFV-CEAILD 230

                   iypkFGlFygyNnlTsDgiytvfTGkdDPLKAGYmtEiskiGqvdtWNGk
                     +++GlF   N+ T + +y +  G+ +          +++G++ ++
    Y76A2B.6   231 VPERIGLFFKANG-TGSKVYEIDDGTRN---------PDDLGKILSYDES 270

                   telpaewWwtdkCnminGdPNALVLtGTdGdmfpPfltktdvLqfFssDl
                   + l+  wW td+   i+G         TdG++f+Pfl k + L++++ +l
    Y76A2B.6   271 PILDETWWSTDESLKIKG---------TDGSLFHPFLSKHEKLYVYVAEL 311

                   CRsfklvFqeeetvkGIPtyRFvvpveefDttsdnnagfcypnkEkvnYF
                   CRs+ l F+ee+++ G+++yRFvvp+e fD t + n+gfc p  Ek  ++
    Y76A2B.6   312 CRSIWLEFKEEVEYRGLKAYRFVVPPEVFDVTHPGNQGFCNP-SEK-QFY 359

                   pdepscplkheClpsGnCAlvDCvlniskCrk.gapGSlvNGTYlLPPGm
                   +  ++ +    C p+G       +l+iskC+ + +p
    Y76A2B.6   360 ESQNDSS---NCMPKG-------LLEISKCQQsQPP-------------- 385

                   fPlvCyPGrlvptPFaiilSfPHFYqAdpvvteaVeGlhPdpeeHePtfl
                                   i +S+P F++A+ +v+ +V+Gl+ + e    +++
    Y76A2B.6   386 ----------------ITISLPNFLFAPSEVRGSVKGLNETDEIRDSIVV 419

                   DiePlTGttLqvakRlQiNlpVkqvkdieq...tsnmpnvivPlfWlnes
                   DieP  G +L ++   Q+N+   + k  + + ++++m+ +++P++ l+e+
    Y76A2B.6   420 DIEPRVGAVLYARRVSQVNIEMWKGKNLTFpvnLKKMKSALIPVLILHET 469

                   ielmkdetvntlwlqlvlvprivgviq<-*
                      ++d  ++++++ql  + +i  + +
    Y76A2B.6   470 S-EIDDDSLEQIRSQLYETESIAYTSC    495



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