Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y76A2B.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y76A2B.6 CE31845 CD36 family status:Partially_confirmed TN:CAD45598 protein_id:CAA21747.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CD36 CD36 family 231.8 1e-65 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CD36 1/1 29 495 .. 1 567 [] 231.8 1e-65
Alignments of top-scoring domains:
CD36: domain 1 of 1, from 29 to 495: score 231.8, E = 1e-65
*->crlnryliilaviga..vfavgGlivivNvfpsIidsqvkknvvLrp
+++++ i +++ig+++++++g li+ v+p+ ++s+++ n +L +
Y76A2B.6 29 MSCCQLVISAVLIGLgsFLLFGSLITHTVVVPKVVKSSIEENSRLVN 75
gtDGsLndaffsWekpPvpvymsFYiFNVTNPdEilnnGakPnVkEvGPY
g+ + + W+ p +++++ Y++ NPdE++n Ga P+V GPY
Y76A2B.6 76 GS-----IMWEKWAMPEYKIRFNMYVYSTKNPDEFMN-GAIPEVTGSGPY 119
tyrErteqKenitFs.dNdTvmyyennktyvFePdlSvgdekydDkivfP
+++ ++en + s +N+Tv y + ty F++ S+ ++ + i +P
Y76A2B.6 120 VFDK---KMENRVVSaENGTVKYRR-FFTYNFNEQESCQTCILGNRIWVP 165
NiGFqVGiDpvltavetmldpplqatltlkliinlglkilgekGtLilFN
N+ ++ ve + + ++++ + l + +F
Y76A2B.6 166 NM-------IYQKFVEAASTEGM---------KAAATTLLSQT----AF- 194
VPvnrtVgelLwsGYeDPilsvAHSgeFvnlfndeflGkgavvfvtkpkp
+ + V elL++GY+DP F+ ++ +v ++++
Y76A2B.6 195 --LEVEVEELLFEGYKDP---------FLDKVC--EIPFMNFV-CEAILD 230
iypkFGlFygyNnlTsDgiytvfTGkdDPLKAGYmtEiskiGqvdtWNGk
+++GlF N+ T + +y + G+ + +++G++ ++
Y76A2B.6 231 VPERIGLFFKANG-TGSKVYEIDDGTRN---------PDDLGKILSYDES 270
telpaewWwtdkCnminGdPNALVLtGTdGdmfpPfltktdvLqfFssDl
+ l+ wW td+ i+G TdG++f+Pfl k + L++++ +l
Y76A2B.6 271 PILDETWWSTDESLKIKG---------TDGSLFHPFLSKHEKLYVYVAEL 311
CRsfklvFqeeetvkGIPtyRFvvpveefDttsdnnagfcypnkEkvnYF
CRs+ l F+ee+++ G+++yRFvvp+e fD t + n+gfc p Ek ++
Y76A2B.6 312 CRSIWLEFKEEVEYRGLKAYRFVVPPEVFDVTHPGNQGFCNP-SEK-QFY 359
pdepscplkheClpsGnCAlvDCvlniskCrk.gapGSlvNGTYlLPPGm
+ ++ + C p+G +l+iskC+ + +p
Y76A2B.6 360 ESQNDSS---NCMPKG-------LLEISKCQQsQPP-------------- 385
fPlvCyPGrlvptPFaiilSfPHFYqAdpvvteaVeGlhPdpeeHePtfl
i +S+P F++A+ +v+ +V+Gl+ + e +++
Y76A2B.6 386 ----------------ITISLPNFLFAPSEVRGSVKGLNETDEIRDSIVV 419
DiePlTGttLqvakRlQiNlpVkqvkdieq...tsnmpnvivPlfWlnes
DieP G +L ++ Q+N+ + k + + ++++m+ +++P++ l+e+
Y76A2B.6 420 DIEPRVGAVLYARRVSQVNIEMWKGKNLTFpvnLKKMKSALIPVLILHET 469
ielmkdetvntlwlqlvlvprivgviq<-*
++d ++++++ql + +i + +
Y76A2B.6 470 S-EIDDDSLEQIRSQLYETESIAYTSC 495