Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y76B12C.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Y76B12C.7 CE29932 status:Partially_confirmed SW:Q9N4C2 protein_id:AAF36067.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CPSF_A CPSF A subunit region 179.6 4.9e-50 1
FKBP FKBP-type peptidyl-prolyl cis-trans isomer 4.2 3.8 1
Pep3_Vps18 Pep3/Vps18/deep orange family 4.0 6.7 1
adh_short short chain dehydrogenase 2.9 9.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
adh_short 1/1 597 657 .. 214 271 .] 2.9 9.3
Pep3_Vps18 1/1 1208 1224 .. 1 20 [. 4.0 6.7
CPSF_A 1/1 1079 1387 .. 1 345 [] 179.6 4.9e-50
FKBP 1/1 1403 1427 .. 1 26 [. 4.2 3.8
Alignments of top-scoring domains:
adh_short: domain 1 of 1, from 597 to 657: score 2.9, E = 9.3
*->e.vadiadpeleerits.titplgrygvtpeeianavlfLasdgasy
++v + +++ + + ++ + gr++ + e ++++++ L + + s+
Y76B12C.7 597 FpV---IQASIVDPYVAlLT-QNGRLL-LYELVMEPYVQLREVDISA 638
s......vtgqtlnvdggi<-*
++ + ++t+q l+ +i
Y76B12C.7 639 TsfatwhATAQNLTQLTSI 657
Pep3_Vps18: domain 1 of 1, from 1208 to 1224: score 4.0, E = 6.7
*->GIvfGdlsEKqiyvnpasnl<-*
GI+f+d + +yv+ +++l
Y76B12C.7 1208 GISFLDMH---YYVYQLHSL 1224
CPSF_A: domain 1 of 1, from 1079 to 1387: score 179.6, E = 4.9e-50
*->ekeassirlidpntfevih.asyklqqnEtalSmasvkfsneettkd
+ + l++++++ +++ ++++++ E+++ ++ v +++e+t ++
Y76B12C.7 1079 ---KYTLNLFSSQDWAAVPnTEISFEDMEAVTACEDVALKSESTISG 1122
kntYlvVGTalnlpeeietvqadhliIcPsrGRilifelieVvPepgkpk
++t l+ GT +n++ee+ +rGRi++ e+ieVvPep +p
Y76B12C.7 1123 LETLLAMGTVNNYGEEVL-----------VRGRIILCEVIEVVPEPDQPT 1161
tgnkLklvhetevkGpVyalcefnGrlLagiGqkvrlydltkdkekkeLr
+ k+k+++ +e+kGpV+ lc nG lL g+Gqkv+++++ + + L+
Y76B12C.7 1162 SNRKIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQFKD---ND-LM 1207
keafidtpvyildiksmHQWgnrIlVgDvmkSvtllrYkeeenqLievAr
+ +f d ++y+ ++ s ++ ++ D ++S++l+r++e + +++ +r
Y76B12C.7 1208 GISFLDMHYYVYQLHSL---RTIAIACDARESMSLIRFQEDNKAMSIASR 1254
D...tnprwvtavefLdddtnLyfagaDasGNlfvlrydpeapkdvdedP
D++++++ +++ +++d+ +f+ +D GN+ y peap
Y76B12C.7 1255 DdrkCAQPPMAS-QLVVDGAHVGFLLSDETGNITMFNYAPEAP------- 1296
tesKslwdrgltsserqkLelvghFHlGeivnsfq....kgslvmknlnd
+s+++++L ++++ +G +n f + ++++sl ++ n+
Y76B12C.7 1297 -----------ESNGGERLTVRAAINIGTNINAFVrlrgHTSLL-QLNNE 1334
ssssdtgasptllygTldGsIGvivpllseeeyrfLeqlqnhLrkeipsa
+ + ++++ t++++ ldGs G + pl e+ yr+L+ lq + ++ p
Y76B12C.7 1335 DEKEAIEQRMTTVFASLDGSFGFVRPL-TEKSYRRLHFLQTFIGSVTP-- 1381
plgGld<-*
+++Gl+
Y76B12C.7 1382 QIAGLH 1387
FKBP: domain 1 of 1, from 1403 to 1427: score 4.2, E = 3.8
*->GdGpekpkkGDtVevhYtGtLedGgk<-*
G +++ ++GD+Ve+ + +L d ++
Y76B12C.7 1403 GRNARNLIDGDVVEQYLHLSLYD-KT 1427