Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y7A5A.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  Y7A5A.1  CE21326    status:Partially_confirmed TR:Q9XVZ2 protein_id:CAA22461.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
FAD_binding_4 FAD binding domain                         79.9    4.3e-21   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
FAD_binding_4   1/1     108   208 ..    64   187 .]    79.9  4.3e-21

Alignments of top-scoring domains:
FAD_binding_4: domain 1 of 1, from 108 to 208: score 79.9, E = 4.3e-21
                   *->ilevDpenggPKvtvtVeaGvtl.dLnralaehsGlalpvdpgspgs
                      +l++D++n+    tvtVe+ +t+++++++l ++ G++l+v +  +g+
     Y7A5A.1   108    VLSLDEKNL----TVTVEPNITVrEICKFLIPK-GYTLAVTL-EIGD 148

                   vtvGGaiatnagGsgsrrkyGlirdnVlglevVtadGevlrlseririgg
                   +t+GG++ + +  + s +k Gl+ + ++++evVtadG+v++++
     Y7A5A.1   149 ATLGGLAFGVGMTTYS-HKVGLYQEAIVSYEVVTADGNVITVT------- 190

                   rlrknsaGyaeivdgeDLfwlfiGseGt<-*
                         + +     ++DLf+ + +s Gt
     Y7A5A.1   191 -----DSNE-----HSDLFYCLPWSHGT    208



[DB home][top]