Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y7A5A.1
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Query: Y7A5A.1 CE21326 status:Partially_confirmed TR:Q9XVZ2 protein_id:CAA22461.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FAD_binding_4 FAD binding domain 79.9 4.3e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FAD_binding_4 1/1 108 208 .. 64 187 .] 79.9 4.3e-21
Alignments of top-scoring domains:
FAD_binding_4: domain 1 of 1, from 108 to 208: score 79.9, E = 4.3e-21
*->ilevDpenggPKvtvtVeaGvtl.dLnralaehsGlalpvdpgspgs
+l++D++n+ tvtVe+ +t+++++++l ++ G++l+v + +g+
Y7A5A.1 108 VLSLDEKNL----TVTVEPNITVrEICKFLIPK-GYTLAVTL-EIGD 148
vtvGGaiatnagGsgsrrkyGlirdnVlglevVtadGevlrlseririgg
+t+GG++ + + + s +k Gl+ + ++++evVtadG+v++++
Y7A5A.1 149 ATLGGLAFGVGMTTYS-HKVGLYQEAIVSYEVVTADGNVITVT------- 190
rlrknsaGyaeivdgeDLfwlfiGseGt<-*
+ + ++DLf+ + +s Gt
Y7A5A.1 191 -----DSNE-----HSDLFYCLPWSHGT 208