Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y87G2A.5
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Query: Y87G2A.5 CE24685 locus:vrs-2 status:Partially_confirmed TR:Q9U1Q4 protein_id:CAB60428.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tRNA-synt_1 tRNA synthetases class I (I, L, M and 846.8 7.1e-251 1
tRNA-synt_1e tRNA synthetases class I (C) 10.4 0.029 1
tRNA-synt_1b tRNA synthetases class I (W and Y) 5.2 1.8 1
Pep_deformylase Polypeptide deformylase 3.2 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tRNA-synt_1e 1/1 631 651 .. 376 400 .. 10.4 0.029
tRNA-synt_1b 1/1 617 652 .. 204 247 .. 5.2 1.8
tRNA-synt_1 1/1 91 719 .. 1 735 [] 846.8 7.1e-251
Pep_deformylase 1/1 810 826 .. 1 17 [. 3.2 6.4
Alignments of top-scoring domains:
tRNA-synt_1e: domain 1 of 1, from 631 to 651: score 10.4, E = 0.029
*->lHnGhvmiRDRRegeKMSKSLGNfl<-*
lH+ miRD g+KMSKSLGN++
Y87G2A.5 631 LHA---MIRDAH-GRKMSKSLGNVI 651
tRNA-synt_1b: domain 1 of 1, from 617 to 652: score 5.2, E = 1.8
*->aee.eevFkkpvgltnpsgarlltgldGgktKMSKSagnsnSaIf<-
a+e ++++ ++l++ ++ ++ G KMSKS+gn +I+
Y87G2A.5 617 AQElTGKLPFKEILLHA----MIRDAHGR--KMSKSLGN---VID 652
*
Y87G2A.5 - -
tRNA-synt_1: domain 1 of 1, from 91 to 719: score 846.8, E = 7.1e-251
*->kvlqfWeeqdyFkps.ldenkk..kekekFvildgPPYatGrlHmGH
+++++We++++Fkp+ +d+ + +++++ +F+ ++PP++tG+lH+GH
Y87G2A.5 91 GWYSWWEKEGFFKPEyIDKLNPgsNPADSFTVCIPPPNVTGNLHVGH 137
alnktlkDiiiRykrMqGfnVlylpGWDhhGLPiEqkVekklgakekkdr
al++t D+i+R++rM G+ +l+ pG+Dh+G++++ +Vek l + + +r
Y87G2A.5 138 ALATTVEDTITRFNRMHGKRTLFNPGCDHAGIATQVVVEKRLKRERGLTR 187
kklGreeFrekcrewameyiaeirsqfkrLGvwvDWdreyfRTldpeyek
++lGr+ F+++++ w+ e ++ i +qf++LG +vDWdr f T+dp+ +
Y87G2A.5 188 HDLGRDRFNQEVWHWKNEKGDVIYDQFRKLGASVDWDRAVF-TMDPKMCR 236
avwwvFveLykKGLvYrgekvVnWcpaleTALsnaEVeykdkeVkdpsih
av ++F ++++ G +Yr +++VnW+ al++A+s++EV+ k+ + + s++
Y87G2A.5 237 AVTEAFIRMHESGTIYRSNRLVNWSCALRSAISDIEVDKKELT--G-STL 283
VafpladddlkaaflgvvdkdtsiviWTTTPWTLPaNlAlavnpdfdYva
+a+p++d+ +++++++ f+Y +
Y87G2A.5 284 IAVPGYDK---------------KIEFGVL-------------NSFAYKI 305
dgkdgqeylIlAtervetmlgdtgvavhltVytpidetykGseLeglkar
g+d e +++ t+r+etmlgd gvavh p+d +yk+ L+g+ +
Y87G2A.5 306 QGSD--EEIVVSTTRIETMLGDSGVAVH-----PDDQRYKH--LVGKQCI 346
hPfvdrakvveqkadaveipiiaDdyVtmefGTGaVkiAPAHgedDYkvG
hPf pi aD +V+mefGTGaVki+PAH+ +DY+vG
Y87G2A.5 347 HPFIPTR----------NLPIFADSFVEMEFGTGAVKITPAHDHNDYEVG 386
lnnikrygLevinpvdGeedGvftenAgpyqtyseevpdFvGmkrfdAdk
+r +L++ n ++ +dG + ++g + GmkrfdA+
Y87G2A.5 387 ----IRQNLPFHNCIT--DDGLISQGCGEFS----------GMKRFDART 420
kivelLkekGlLlkkekilhsyPfcwRsdegtpliyratpQWFVrmdeln
+++e+LkekGl+ ke++ + +P c Rs ++++++ ++pQW+V+ +
Y87G2A.5 421 AVIEALKEKGLYRGKEDNPMVVPTCSRS--KDVIEPILKPQWYVKCAHM- 467
lGrTLaddalkavekgkvqwvPewgeEkrygnWleNirDWcISRQRyWGt
a++a +av +g+ q++Pe+ + ++ ++Wle rDWcISRQ++WG+
Y87G2A.5 468 -----AEKAVAAVANGDLQIIPEFHK-ATWNRWLESSRDWCISRQLWWGH 511
PIPlwvsedgeevvvvgsdkELpelvaarneedPGveSPielhrawvdlt
+IP++++ + + ++ E ++v ar e++ +l++a ++
Y87G2A.5 512 RIPAYYISFAD--GREQPLPEENYWVSARTEQE-------ALAKAAQKFQ 552
akeslpnGkkkgtlerdeDVLDtWFdSGswpfatlgyPfekdglldteaf
++e +l+ deDVLDtWF+SG wpfa+ g+P+ t+++
Y87G2A.5 553 VPEA------EILLKWDEDVLDTWFSSGMWPFAVFGWPD-----A-TKDM 590
ekwfPaDmyleGsDqAvlHLlrgWFysllllgtalvgskvPykevLvhGl
+ +fP ++++G+D+ l++W++++ +++ +l+g k P+ke+L h +
Y87G2A.5 591 DLFFPGAVLETGHDI-----LFFWVARMVFMAQELTG-KLPFKEILLHAM 634
vlDDAFYYveqGrRWVMKMSKSkGNvidPldvieGI.LeDLhaKllggnl
++D + Gr KMSKS+GNvidPldvi+GI+L DL a llggnl
Y87G2A.5 635 IRD------AHGR----KMSKSLGNVIDPLDVIRGIsLNDLQAQLLGGNL 674
qpqeveKa.k.qkk.FpnGIpkyGADaLRlyLlsssppgqdiafs<-*
+++e++ a+ +q ++p GIp++G+DaLR++Lls+++ g+di+++
Y87G2A.5 675 DEKEIAVAkEgQARdYPDGIPECGVDALRFALLSYTSQGRDINLD 719
Pep_deformylase: domain 1 of 1, from 810 to 826: score 3.2, E = 6.4
*->tvkpIvkyGdpvLrkpA<-*
t+kp+++ ++ +Lr++A
Y87G2A.5 810 TIKPVLYGDNTTLRQVA 826