Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y92H12A.2
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Query: Y92H12A.2 CE31391 status:Partially_confirmed TR:Q9BKW4 protein_id:AAK29730.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HECT HECT-domain (ubiquitin-transferase) 466.2 2.8e-136 2
WW WW domain 135.8 8e-37 3
C2 C2 domain 65.0 2.6e-17 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
C2 1/1 21 106 .. 1 88 [] 65.0 2.6e-17
WW 1/3 169 198 .. 1 30 [] 41.4 7.2e-10
WW 2/3 318 347 .. 1 30 [] 43.8 1.5e-10
WW 3/3 369 398 .. 1 30 [] 53.5 2.7e-13
HECT 1/2 487 630 .. 1 186 [. 228.6 9.3e-65
HECT 2/2 631 769 .. 210 358 .] 238.1 1.3e-67
Alignments of top-scoring domains:
C2: domain 1 of 1, from 21 to 106: score 65.0, E = 2.6e-17
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkd.qk.kkTkvikk
LrV+++++ L ++D + g ++PY+ ++l + +d++ + + +++kk
Y92H12A.2 21 LRVRLLRGTKLGKRD-LLGVCSPYCMIRLENSNGDtVDeVQVETKKK 66
tlNPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
t+NP+WN +FtF v+ + + i VyD++r+++d ++G vs
Y92H12A.2 67 TRNPTWNSVFTFRVTRACQMK---ILVYDENRLRKDVLMGFVS 106
WW: domain 1 of 3, from 169 to 198: score 41.4, E = 7.2e-10
*->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
+p gWeer d +Gr+ Y+Nh +tTq+++P
Y92H12A.2 169 MPQGWEEREDGNGRTVYVNHALRTTQFTPP 198
WW: domain 2 of 3, from 318 to 347: score 43.8, E = 1.5e-10
*->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
lp gW + p+Gr+++++h TktT+W++P
Y92H12A.2 318 LPDGWDMQVAPNGRTFFIDHRTKTTTWTDP 347
WW: domain 3 of 3, from 369 to 398: score 53.5, E = 2.7e-13
*->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
lp gWe+r ++dGr+++++hn ++TqWe+P
Y92H12A.2 369 LPAGWEQRVHADGRVFFIDHNRRRTQWEDP 398
HECT: domain 1 of 2, from 487 to 630: score 228.6, E = 9.3e-65
*->flvSkemFnpmyglffyspesdRytlyidpnsddkTTLLFPEPLNPf
fl+S+ Fnp+yglf+ys+ +d+ytl+i+p s
Y92H12A.2 487 FLLSHQIFNPYYGLFEYSA-TDNYTLQINPHSE-------------- 518
kaneehleyfkfiGrvvGlallhnrLLDlfFarafyKklLrksikfvTTV
+n+ehl+yf fiGr +G+a++h++LLD+fF+r+fyK++L+k+i+
Y92H12A.2 519 ACNPEHLSYFHFIGRIIGMAIYHGKLLDAFFIRPFYKMMLGKKIT----- 563
PSDVEtsfhDlesvDpelYnsLikiLeNtedKefEevinltdLtfsidle
+ D+esvD e+YnsLi+ N++ ++Ltfs+d+
Y92H12A.2 564 -------LFDMESVDNEYYNSLIYVKDNDPA--------DLELTFSLDDS 598
efgndekvSKEYVTVELiPnGrnivvTksNkkEYvhlvi<-*
fg++ ++ ELiPnG+n++vT++Nk+EY+++v+
Y92H12A.2 599 IFGETQNI-------ELIPNGANVPVTEDNKEEYIEAVV 630
HECT: domain 2 of 2, from 631 to 769: score 238.1, E = 1.3e-67
*->peCnlikiFneeELelLigGvEEegdiDvddLksnTeYedESSEGYs
p nl +F+++ELelL++G+ +iDv+d+k nT Y++ GY
Y92H12A.2 631 PS-NLLRLFDANELELLMCGL---QKIDVKDWKANTIYKG----GYG 669
edsqvIqWFWeiveefdkeeRakLLQFvTGsprlPlqGFksLeGsngipk
+sqv++ FW+++ +fd+e Ra+ LQFv G++r+P++GF +L+Gsng++k
Y92H12A.2 670 PSSQVVHNFWKCILSFDNEMRARVLQFVSGTSRVPMNGFRELYGSNGLQK 719
ftiekagtederLPtAhTCfNrLdLPkYsSKeiLrsKLllAIeeCgeGFg
ftie++g + + LP+AhTCfNrLdLP+Y+ +++L+sKLl AIe+ +e F
Y92H12A.2 720 FTIERWG-SADMLPRAHTCFNRLDLPPYTTFKELKSKLLTAIEN-SEIFS 767
lv<-*
+v
Y92H12A.2 768 GV 769