Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y92H12A.2
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Query:  Y92H12A.2  CE31391    status:Partially_confirmed TR:Q9BKW4 protein_id:AAK29730.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
HECT     HECT-domain (ubiquitin-transferase)            466.2   2.8e-136   2
WW       WW domain                                      135.8      8e-37   3
C2       C2 domain                                       65.0    2.6e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1      21   106 ..     1    88 []    65.0  2.6e-17
WW         1/3     169   198 ..     1    30 []    41.4  7.2e-10
WW         2/3     318   347 ..     1    30 []    43.8  1.5e-10
WW         3/3     369   398 ..     1    30 []    53.5  2.7e-13
HECT       1/2     487   630 ..     1   186 [.   228.6  9.3e-65
HECT       2/2     631   769 ..   210   358 .]   238.1  1.3e-67

Alignments of top-scoring domains:
C2: domain 1 of 1, from 21 to 106: score 65.0, E = 2.6e-17
                   *->LrVtvieAknLppkDkkngksDPYVkvslggdpkd.qk.kkTkvikk
                      LrV+++++  L ++D + g ++PY+ ++l +  +d++ + + +++kk
   Y92H12A.2    21    LRVRLLRGTKLGKRD-LLGVCSPYCMIRLENSNGDtVDeVQVETKKK 66

                   tlNPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
                   t+NP+WN +FtF v+ +   +   i VyD++r+++d ++G vs
   Y92H12A.2    67 TRNPTWNSVFTFRVTRACQMK---ILVYDENRLRKDVLMGFVS    106

WW: domain 1 of 3, from 169 to 198: score 41.4, E = 7.2e-10
                   *->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
                      +p gWeer d +Gr+ Y+Nh  +tTq+++P
   Y92H12A.2   169    MPQGWEEREDGNGRTVYVNHALRTTQFTPP    198

WW: domain 2 of 3, from 318 to 347: score 43.8, E = 1.5e-10
                   *->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
                      lp gW +   p+Gr+++++h TktT+W++P
   Y92H12A.2   318    LPDGWDMQVAPNGRTFFIDHRTKTTTWTDP    347

WW: domain 3 of 3, from 369 to 398: score 53.5, E = 2.7e-13
                   *->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
                      lp gWe+r ++dGr+++++hn ++TqWe+P
   Y92H12A.2   369    LPAGWEQRVHADGRVFFIDHNRRRTQWEDP    398

HECT: domain 1 of 2, from 487 to 630: score 228.6, E = 9.3e-65
                   *->flvSkemFnpmyglffyspesdRytlyidpnsddkTTLLFPEPLNPf
                      fl+S+  Fnp+yglf+ys+ +d+ytl+i+p s
   Y92H12A.2   487    FLLSHQIFNPYYGLFEYSA-TDNYTLQINPHSE-------------- 518

                   kaneehleyfkfiGrvvGlallhnrLLDlfFarafyKklLrksikfvTTV
                    +n+ehl+yf fiGr +G+a++h++LLD+fF+r+fyK++L+k+i+
   Y92H12A.2   519 ACNPEHLSYFHFIGRIIGMAIYHGKLLDAFFIRPFYKMMLGKKIT----- 563

                   PSDVEtsfhDlesvDpelYnsLikiLeNtedKefEevinltdLtfsidle
                          + D+esvD e+YnsLi+   N++          ++Ltfs+d+
   Y92H12A.2   564 -------LFDMESVDNEYYNSLIYVKDNDPA--------DLELTFSLDDS 598

                   efgndekvSKEYVTVELiPnGrnivvTksNkkEYvhlvi<-*
                    fg++ ++       ELiPnG+n++vT++Nk+EY+++v+
   Y92H12A.2   599 IFGETQNI-------ELIPNGANVPVTEDNKEEYIEAVV    630

HECT: domain 2 of 2, from 631 to 769: score 238.1, E = 1.3e-67
                   *->peCnlikiFneeELelLigGvEEegdiDvddLksnTeYedESSEGYs
                      p  nl  +F+++ELelL++G+    +iDv+d+k nT Y++    GY
   Y92H12A.2   631    PS-NLLRLFDANELELLMCGL---QKIDVKDWKANTIYKG----GYG 669

                   edsqvIqWFWeiveefdkeeRakLLQFvTGsprlPlqGFksLeGsngipk
                    +sqv++ FW+++ +fd+e Ra+ LQFv G++r+P++GF +L+Gsng++k
   Y92H12A.2   670 PSSQVVHNFWKCILSFDNEMRARVLQFVSGTSRVPMNGFRELYGSNGLQK 719

                   ftiekagtederLPtAhTCfNrLdLPkYsSKeiLrsKLllAIeeCgeGFg
                   ftie++g + + LP+AhTCfNrLdLP+Y+ +++L+sKLl AIe+ +e F
   Y92H12A.2   720 FTIERWG-SADMLPRAHTCFNRLDLPPYTTFKELKSKLLTAIEN-SEIFS 767

                   lv<-*
                   +v
   Y92H12A.2   768 GV    769



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