Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y97E10AR.4
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Query: Y97E10AR.4 CE23171 status:Partially_confirmed TR:Q9N2U7 protein_id:AAF60912.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SPK Domain of unknown function (DUF545) 323.8 1.9e-93 3
adeno_100 Late 100kD protein 2.2 4.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SPK 1/3 65 181 .. 1 115 [] 122.8 2.5e-33
adeno_100 1/1 211 219 .. 616 624 .] 2.2 4.5
SPK 2/3 196 311 .. 1 115 [] 122.4 3.4e-33
SPK 3/3 356 454 .. 13 115 .] 79.2 5.1e-21
Alignments of top-scoring domains:
SPK: domain 1 of 3, from 65 to 181: score 122.8, E = 2.5e-33
*->aeltrfmdFLvekTKdave.v.k.kPlpvatkvfeeFselegsglse
e +++FL +k++d + +++k++ p +++++e+F+ + gs++++
Y97E10AR.4 65 IEEDAIWTFLYNKIHDESAnIdKkNVDPDSNALWEDFRTKTGSVRQV 111
styykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGt
+ +++++ + +++ ++ ++ S+E++ +l FaL+++Ve+ FL+ ++++G+
Y97E10AR.4 112 RRLRSHYFNEMVRSLHS-ACLSCETKLKLYFALGIPVEEGFLRDLQEEGD 160
VeLDekkRIckYtSnDGklkL<-*
V++D ++RI++++ ++G l+L
Y97E10AR.4 161 VKVDQMNRIEYFAQYNGILCL 181
adeno_100: domain 1 of 1, from 211 to 219: score 2.2, E = 4.5
*->DPqTGEeLn<-*
DPqTGE++
Y97E10AR.4 211 DPQTGEVIH 219
SPK: domain 2 of 3, from 196 to 311: score 122.4, E = 3.4e-33
*->aeltrfmdFLvekTKda.ve.v.k.kPlpvatkvfeeFselegsgls
e+++++dFL ek++d ++ +v +++ +p++ +++++++++ s++
Y97E10AR.4 196 EEDSEMWDFLNEKIHDPqTGeViHpHDMPCLYLLWKDYRKKVSSPKR 242
estyykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiG
++t+yk++++k+ n++k ++ + +++++ F L+++V d ++ + i+
Y97E10AR.4 243 IETIYKHYCEKMYLNLHK-SDLDPSSKAKIAFSLGIPVYDTLWKILSVIA 291
tVeLDekkRIckYtSnDGklkL<-*
+V+LD k+R++ Y +++++ L
Y97E10AR.4 292 DVKLDGKRRLVDY--HEWDSGL 311
SPK: domain 3 of 3, from 356 to 454: score 79.2, E = 5.1e-21
*->kTKdavevk.kPlpvatkvfeeFselegsglsestyykRFhrkLAPn
+TK+ ++ +++ ++ ++++ +e+ + +++e+ty +RF+ + P
Y97E10AR.4 356 QTKR-IQ-RnNSALTDALFWKNLCEKSDVKRNERTYLRRFRDLMLPV 400
maklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVeLDekkRIckYtS
+ + ++ +++ l+F+L ++V+++FL ++++ ++VeLD+ +I+ Y
Y97E10AR.4 401 LYL-AKIPKLMKMALHFGLEQPVHKNFLQELKQDAIVELDNSGCIVAY-- 447
nDGklkL<-*
+++k +L
Y97E10AR.4 448 RERKKRL 454