Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC328.2
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Query: ZC328.2 CE31395 zinc finger protein status:Partially_confirmed TR:O02050 protein_id:AAK39376.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C2H2 Zinc finger, C2H2 type 56.1 7.5e-13 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C2H2 1/3 299 321 .. 1 24 [] 19.9 0.007
zf-C2H2 2/3 327 349 .. 1 24 [] 33.3 3.2e-06
zf-C2H2 3/3 355 378 .. 1 24 [] 18.2 0.018
Alignments of top-scoring domains:
zf-C2H2: domain 1 of 3, from 299 to 321: score 19.9, E = 0.007
*->ykCpfdCgksFsrksnLkrHlrtH<-*
y C +C k F+r++ L rH r+H
ZC328.2 299 YYCF-ICEKDFRRPDILSRHTRRH 321
zf-C2H2: domain 2 of 3, from 327 to 349: score 33.3, E = 3.2e-06
*->ykCpfdCgksFsrksnLkrHlrtH<-*
+kC+ dCg+ Fsr+++L++H+rtH
ZC328.2 327 FKCE-DCGRFFSRSDHLRTHRRTH 349
zf-C2H2: domain 3 of 3, from 355 to 378: score 18.2, E = 0.018
*->ykCpfdCgksFsrksnLkrHlrt.H<-*
y C +C++s +r++ L+rH+ t+H
ZC328.2 355 YHCC-VCNYSARRRDVLTRHMSTrH 378