Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC334.3
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Query: ZC334.3 CE24702 locus:ins-24 status:Partially_confirmed TR:Q9U1P6 protein_id:CAB04964.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ins_beta_nem Nematode insulin-related peptide beta ty 78.5 1.6e-29 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ins_beta_nem 1/1 74 120 .. 1 50 [] 78.5 1.6e-29
Alignments of top-scoring domains:
Ins_beta_nem: domain 1 of 1, from 74 to 120: score 78.5, E = 1.6e-29
*->vRaCGRrLlkrVfavCGeacnpqndvDIatkCCkkqaGCTddyIksa
++aCGR+++++V+++C+++c++qnd D+++k+C+++ +Td++++sa
ZC334.3 74 QKACGRSMMMKVQKLCAGGCTIQND-DLTIKSCSTG--YTDAGFISA 117
cCP<-*
cCP
ZC334.3 118 CCP 120