Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC334.3
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Query:  ZC334.3  CE24702  locus:ins-24  status:Partially_confirmed TR:Q9U1P6 protein_id:CAB04964.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Ins_beta_nem Nematode insulin-related peptide beta ty    78.5    1.6e-29   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ins_beta_nem   1/1      74   120 ..     1    50 []    78.5  1.6e-29

Alignments of top-scoring domains:
Ins_beta_nem: domain 1 of 1, from 74 to 120: score 78.5, E = 1.6e-29
                   *->vRaCGRrLlkrVfavCGeacnpqndvDIatkCCkkqaGCTddyIksa
                      ++aCGR+++++V+++C+++c++qnd D+++k+C+++  +Td++++sa
     ZC334.3    74    QKACGRSMMMKVQKLCAGGCTIQND-DLTIKSCSTG--YTDAGFISA 117

                   cCP<-*
                   cCP
     ZC334.3   118 CCP    120



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