Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC334.2
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Query: ZC334.2 CE19308 locus:ins-30 status:Partially_confirmed TR:Q9XUI8 protein_id:CAB04963.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ins_beta_nem Nematode insulin-related peptide beta ty 24.3 3e-08 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ins_beta_nem 1/1 65 111 .. 1 50 [] 24.3 3e-08
Alignments of top-scoring domains:
Ins_beta_nem: domain 1 of 1, from 65 to 111: score 24.3, E = 3e-08
*->vRaCGRrLlkrVfavCGeacnpqndvDIatkCCkkqaGCTddyIksa
++ CGR+Ll + + +C + c++ d D+ C k+ Td+ + +
ZC334.2 65 KKTCGRSLLIKIQQLCHGICTVHAD-DLHETACMKG--LTDSQLINS 108
cCP<-*
cCP
ZC334.2 109 CCP 111