Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC334.2
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Query:  ZC334.2  CE19308  locus:ins-30  status:Partially_confirmed TR:Q9XUI8 protein_id:CAB04963.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Ins_beta_nem Nematode insulin-related peptide beta ty    24.3      3e-08   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ins_beta_nem   1/1      65   111 ..     1    50 []    24.3    3e-08

Alignments of top-scoring domains:
Ins_beta_nem: domain 1 of 1, from 65 to 111: score 24.3, E = 3e-08
                   *->vRaCGRrLlkrVfavCGeacnpqndvDIatkCCkkqaGCTddyIksa
                      ++ CGR+Ll + + +C + c++  d D+    C k+   Td+  + +
     ZC334.2    65    KKTCGRSLLIKIQQLCHGICTVHAD-DLHETACMKG--LTDSQLINS 108

                   cCP<-*
                   cCP
     ZC334.2   109 CCP    111



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