Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC373.4
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Query: ZC373.4 CE02377 calcium\/calmodulin dependent protein kinase status:Partially_confirmed TR:Q23260 protein_id:CAA88976.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 273.4 2.9e-78 1
HMG14_17 HMG14 and HMG17 3.9 9.4 1
PsbR Photosystem II 10 kDa polypeptide PsbR 3.4 9.4 1
Amidohydro_2 Amidohydrolase family 3.1 4.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PsbR 1/1 6 26 .. 1 21 [. 3.4 9.4
pkinase 1/1 45 300 .. 1 294 [] 273.4 2.9e-78
Amidohydro_2 1/1 314 338 .. 366 390 .] 3.1 4.9
HMG14_17 1/1 502 518 .. 1 21 [. 3.9 9.4
Alignments of top-scoring domains:
PsbR: domain 1 of 1, from 6 to 26: score 3.4, E = 9.4
*->sggkKvktdkpyleGiddPtv<-*
sg +K+k+d y +d+P v
ZC373.4 6 SGSGKIKVDEHYPSELDEPPV 26
pkinase: domain 1 of 1, from 45 to 300: score 273.4, E = 2.9e-78
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek.rfl
y++ + lG G fGkVy +++k +tgk++A K +k +++ ++ +
ZC373.4 45 YQVTKLLGDGKFGKVYCVIEK-ETGKEFAAKFIK--IRKEADRaEVE 88
rEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrnggp
rE++il +L+Hp I +++++f+ t + + l+mE ++gG+Lfd++ ++ +
ZC373.4 89 REVSILTQLRHPRIAQIYDAFYTTTNDVVLIMEIVRGGELFDRVAEESYV 138
lsekeakkialQilrGleYLHsngivHRDLKpeNILlden.dgtvKiaDF
lse +++i+ Q++++++Y+H ++i+H D+KpeNI++++ +++ +K++DF
ZC373.4 139 LSELAVVMIICQLCEAIDYIHKQNILHLDVKPENIMCVSLtGNRIKLIDF 188
GLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviLyEl
GLAr ++ + l+ GTp++ APEv ++ + + D+WS+Gvi y l
ZC373.4 189 GLARHYDGTQELKYMAGTPEFA-APEV-IKFEKLDYHTDMWSIGVITYIL 236
ltggplfpgadlpaftggdevdqliifvlklPfsdelpktridpleelfr
l+g +Pf + d+l e ++
ZC373.4 237 LSG--------------------------YSPFLG-------DNLGETYC 253
iikrp.glrlplpsncSeelkdLlkkcLnkDPskRpGsatakeilnhpwf
+++ + + ++++ ee+kd+++k+L +D skR +e+l+hpw+
ZC373.4 254 NVEKGvWEFTEEFDTVTEEAKDFVTKLLVYDQSKRM---LPHECLQHPWI 300
<-*
ZC373.4 - -
Amidohydro_2: domain 1 of 1, from 314 to 338: score 3.1, E = 4.9
*->llalgLsdevkrkilgdNAarllpl<-*
+++l+ + + ++i+++NA+r +++
ZC373.4 314 EKPLNAPTLDNKQIMRYNARRKFRR 338
HMG14_17: domain 1 of 1, from 502 to 518: score 3.9, E = 9.4
*->PKRKvaaaeggdkekvkdePk<-*
PKRK+ + +++ke P+
ZC373.4 502 PKRKSLCSVKEEKE----IPA 518