Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC410.7b
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Query: ZC410.7b CE26843 locus:lpl-1 status:Partially_confirmed TR:Q9BI33 protein_id:CAC35869.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BPL_LipA_LipB Biotin/lipoate A/B protein ligase famil 78.5 5.8e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BPL_LipA_LipB 1/1 130 243 .. 1 151 [] 78.5 5.8e-21
Alignments of top-scoring domains:
BPL_LipA_LipB: domain 1 of 1, from 130 to 243: score 78.5, E = 5.8e-21
*->pvvtlGrr....qdstnevllelaeelagpekegivvvareQTaGRg
pv+t+G r+++ + ++++l++l g++++++
ZC410.7b 130 PVYTVGIRskgyTKEEETRLMRL----------GAEFHRT------S 160
RGGrvwfhdpGqnlaySlillpelpgvynldvrelvrllaelvvkallel
RGG ++fh+pGq++ y++++ ++++ ++l + a + +
ZC410.7b 161 RGGLITFHGPGQLVLYPICDVRRIS----------IKQLDA----ATEGF 196
giekelsplcarikwpNDvlvnegkKiaGilveirrrgnglgavvhGigl
gi ++ + ++v+v +++K+a+i++ +++ g+ +hGi++
ZC410.7b 197 GIKN------VGRTANTGVWVSNERKLAAIGIAVSG-----GVSYHGIAI 235
Nvntdlpe<-*
N+ntdl +
ZC410.7b 236 NCNTDLRW 243