Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC410.7b
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Query:  ZC410.7b  CE26843  locus:lpl-1  status:Partially_confirmed TR:Q9BI33 protein_id:CAC35869.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
BPL_LipA_LipB Biotin/lipoate A/B protein ligase famil    78.5    5.8e-21   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
BPL_LipA_LipB   1/1     130   243 ..     1   151 []    78.5  5.8e-21

Alignments of top-scoring domains:
BPL_LipA_LipB: domain 1 of 1, from 130 to 243: score 78.5, E = 5.8e-21
                   *->pvvtlGrr....qdstnevllelaeelagpekegivvvareQTaGRg
                      pv+t+G r+++ +  ++++l++l          g++++++
    ZC410.7b   130    PVYTVGIRskgyTKEEETRLMRL----------GAEFHRT------S 160

                   RGGrvwfhdpGqnlaySlillpelpgvynldvrelvrllaelvvkallel
                   RGG ++fh+pGq++ y++++ ++++           ++l +    a + +
    ZC410.7b   161 RGGLITFHGPGQLVLYPICDVRRIS----------IKQLDA----ATEGF 196

                   giekelsplcarikwpNDvlvnegkKiaGilveirrrgnglgavvhGigl
                   gi        ++ +  ++v+v +++K+a+i++ +++     g+ +hGi++
    ZC410.7b   197 GIKN------VGRTANTGVWVSNERKLAAIGIAVSG-----GVSYHGIAI 235

                   Nvntdlpe<-*
                   N+ntdl +
    ZC410.7b   236 NCNTDLRW    243



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