Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC416.8b
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Query: ZC416.8b CE17308 locus:cha-1 choline acetyltransferase status:Confirmed SW:P32756 protein_id:AAB88370.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Carn_acyltransf Choline/Carnitine o-acyltransferase 941.1 2.9e-279 1
U-box U-box domain 12.4 0.0051 1
IBV_3C IBV 3C protein 6.7 1.1 1
Arthro_defensin Arthropod defensin 3.2 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IBV_3C 1/1 405 424 .. 74 93 .] 6.7 1.1
Arthro_defensin 1/1 511 528 .. 1 18 [. 3.2 4.2
U-box 1/1 537 554 .. 1 18 [. 12.4 0.0051
Carn_acyltransf 1/1 19 623 .. 1 674 [] 941.1 2.9e-279
Alignments of top-scoring domains:
IBV_3C: domain 1 of 1, from 405 to 424: score 6.7, E = 1.1
*->nksELEavvvnEFPKnGWkq<-*
n+ ELE + nEF K k+
ZC416.8b 405 NELELEVLIFNEFGKDSIKN 424
Arthro_defensin: domain 1 of 1, from 511 to 528: score 3.2, E = 4.2
*->gkgcpvNhsaCaaHClak<-*
g v++ +Ca+ Cla+
ZC416.8b 511 ISGYGVDNHLCALFCLAR 528
U-box: domain 1 of 1, from 537 to 554: score 12.4, E = 0.0051
*->DiPDEFlDPItleLMkDP<-*
DiP FlDP+ +e M++P
ZC416.8b 537 DIPSLFLDPLWSEVMRFP 554
Carn_acyltransf: domain 1 of 1, from 19 to 623: score 941.1, E = 2.9e-279
*->sLPkLPVPaLedTlkrYLe.slkPllsedeelektkalvreFvepgg
+LPk PVP+Le+Tl+rYLe +++ + +++ l++t++++++Fv+
ZC416.8b 19 ALPKPPVPSLEATLDRYLEyAAVVAVGQKASLATTHDAAHKFVR--- 62
eGekLQekLleyakktAksnkkhdNWlsewWldyaYlagrdvplpvNSsf
+++ LQe+Lle+a+k+ +NW++++Wl+++Y+++r +p pvNS++
ZC416.8b 63 QATPLQEQLLEIAEKS-------PNWATKFWLPEMYMRVR-MPTPVNSNP 104
gshvdfpkqdfpdtAyndQlrrAArlihsalsfkraldreeLPEVFHlNP
g ++fpk++f+++ +d++++ A l++++l++k+++d +++
ZC416.8b 105 G--YIFPKVKFETK--EDHIKYTALLTRGLLEYKNLIDTKQV-------- 142
kpdtakGkliflPSLSWyGAvlkgtPLCMnQYkrLFntcRvPgkprdeqD
++++++G ++++++CM+QY+r ++++R+Pg++ +D
ZC416.8b 143 CREKSTG--------------AQKLQMCMEQYDRVLSCYREPGVG---ED 175
siqnyskskkegkcpeHvvVicrGqfYkldvldsrnngklltpeeleaqL
++++++k++++ +eHv+V+cr+q++ l+ + ng l++++++e+qL
ZC416.8b 176 TQIRKQKTNDG---NEHVLVMCRNQTFLLHSRI---NGALVSYADVEYQL 219
arIlsdssqeepkeapiGaLTsenRdeWakaRqkLlkdgpeNkesLekIe
a+I + s+ +++++a+iGa ++Rd+ a ++q++l ++ N +s+e+++
ZC416.8b 220 AQIEEISKINQNNTANIGASGVGPRDNAALFWQDMLTVEQ-NSKSYEWVK 268
sAlFvvCLDddspedtn.gdnrpvteedkkctsm.lsglhgggshqvGdg
sAlFvvCLD+++p+d++++d+++++e++k++ ++++s+l+g+gs+ +g
ZC416.8b 269 SALFVVCLDMEDPIDYGkNDTMSISEKEKEFVARgYSTLTGHGSS--KFG 316
tNRWfDKsLQlIVtkNGkaGlnaEHSpaDGipvlrLmeevykvdeqilks
+NRW+D ++Ql+V+++G++Gl++EHS+a+Gi++++++e+++++ ++++ks
ZC416.8b 317 LNRWYDATIQLVVSSSGVNGLCIEHSTAEGIVIINMAETAIRYAQKYFKS 366
nvneegrpvgspsardgsslplPekLeFditpelqseIekAkekfdklis
++v+++ + +++P+ L ++++++ ++ ++k++e+fd+l++
ZC416.8b 367 ------KMVWNDVR-----NVHPKSLTWHFSENSRNILKKQAEVFDELAN 405
dldlvvlqFtgfGKgfiKkcklSPDaFiQlAlQLAyYkalyGkfvpTYEs
+l+l+vl F++fGK++iK++++SPD+FiQl++QLA+Yk ++G++v TYEs
ZC416.8b 406 ELELEVLIFNEFGKDSIKNWRVSPDGFIQLIMQLAHYK-THGHLVSTYES 454
ASTRaFlhGRTETiRSvTtesleFVqaMlsekpseskeeklqLlkkAckk
AS+R+F GR+++iR++T+e+le+V+aM+s ++eske+kl+L+kkA+ k
ZC416.8b 455 ASVRRFGAGRVDNIRANTQEALEWVTAMAS--KKESKERKLELFKKAVLK 502
HvqytkeAstGkGvDRHLfgLkllakelgveiPfSplLleiP.iFlDpky
+v++t e+++G+GvD+HL++L++la+e++++++ ++iP++FlDp++
ZC416.8b 503 QVKVTLENISGYGVDNHLCALFCLAREREETTG-----EDIPsLFLDPLW 547
llsnsfvlSfqtnstSedqvptetfiggg...FGPVvdDGyGicYniqGe
+ +++f lS tS qv t+++i + ++G+Vv+DGyG++Yniq +
ZC416.8b 548 SEVMRFPLS-----TS--QVTTSLDIPDCyltYGAVVRDGYGCPYNIQ-P 589
edifvhissfsScpeTdadrfakyLekaLldmrd<-*
++++++ ++f+S+p+Td ++f+k+L a++d+++
ZC416.8b 590 DRVIFAPTAFRSDPRTDLQHFKKSLAGAMRDVKE 623