Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC416.8b
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Query:  ZC416.8b  CE17308  locus:cha-1 choline acetyltransferase status:Confirmed SW:P32756 protein_id:AAB88370.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Carn_acyltransf Choline/Carnitine o-acyltransferase     941.1   2.9e-279   1
U-box           U-box domain                             12.4     0.0051   1
IBV_3C          IBV 3C protein                            6.7        1.1   1
Arthro_defensin Arthropod defensin                        3.2        4.2   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
IBV_3C            1/1     405   424 ..    74    93 .]     6.7      1.1
Arthro_defensin   1/1     511   528 ..     1    18 [.     3.2      4.2
U-box             1/1     537   554 ..     1    18 [.    12.4   0.0051
Carn_acyltransf   1/1      19   623 ..     1   674 []   941.1 2.9e-279

Alignments of top-scoring domains:
IBV_3C: domain 1 of 1, from 405 to 424: score 6.7, E = 1.1
                   *->nksELEavvvnEFPKnGWkq<-*
                      n+ ELE  + nEF K   k+
    ZC416.8b   405    NELELEVLIFNEFGKDSIKN    424

Arthro_defensin: domain 1 of 1, from 511 to 528: score 3.2, E = 4.2
                   *->gkgcpvNhsaCaaHClak<-*
                        g  v++ +Ca+ Cla+
    ZC416.8b   511    ISGYGVDNHLCALFCLAR    528

U-box: domain 1 of 1, from 537 to 554: score 12.4, E = 0.0051
                   *->DiPDEFlDPItleLMkDP<-*
                      DiP  FlDP+ +e M++P
    ZC416.8b   537    DIPSLFLDPLWSEVMRFP    554

Carn_acyltransf: domain 1 of 1, from 19 to 623: score 941.1, E = 2.9e-279
                   *->sLPkLPVPaLedTlkrYLe.slkPllsedeelektkalvreFvepgg
                      +LPk PVP+Le+Tl+rYLe +++  + +++ l++t++++++Fv+
    ZC416.8b    19    ALPKPPVPSLEATLDRYLEyAAVVAVGQKASLATTHDAAHKFVR--- 62

                   eGekLQekLleyakktAksnkkhdNWlsewWldyaYlagrdvplpvNSsf
                   +++ LQe+Lle+a+k+       +NW++++Wl+++Y+++r +p pvNS++
    ZC416.8b    63 QATPLQEQLLEIAEKS-------PNWATKFWLPEMYMRVR-MPTPVNSNP 104

                   gshvdfpkqdfpdtAyndQlrrAArlihsalsfkraldreeLPEVFHlNP
                   g  ++fpk++f+++  +d++++ A l++++l++k+++d +++
    ZC416.8b   105 G--YIFPKVKFETK--EDHIKYTALLTRGLLEYKNLIDTKQV-------- 142

                   kpdtakGkliflPSLSWyGAvlkgtPLCMnQYkrLFntcRvPgkprdeqD
                   ++++++G              ++++++CM+QY+r ++++R+Pg++   +D
    ZC416.8b   143 CREKSTG--------------AQKLQMCMEQYDRVLSCYREPGVG---ED 175

                   siqnyskskkegkcpeHvvVicrGqfYkldvldsrnngklltpeeleaqL
                   ++++++k++++   +eHv+V+cr+q++ l+  +   ng l++++++e+qL
    ZC416.8b   176 TQIRKQKTNDG---NEHVLVMCRNQTFLLHSRI---NGALVSYADVEYQL 219

                   arIlsdssqeepkeapiGaLTsenRdeWakaRqkLlkdgpeNkesLekIe
                   a+I + s+ +++++a+iGa   ++Rd+ a ++q++l  ++ N +s+e+++
    ZC416.8b   220 AQIEEISKINQNNTANIGASGVGPRDNAALFWQDMLTVEQ-NSKSYEWVK 268

                   sAlFvvCLDddspedtn.gdnrpvteedkkctsm.lsglhgggshqvGdg
                   sAlFvvCLD+++p+d++++d+++++e++k++ ++++s+l+g+gs+   +g
    ZC416.8b   269 SALFVVCLDMEDPIDYGkNDTMSISEKEKEFVARgYSTLTGHGSS--KFG 316

                   tNRWfDKsLQlIVtkNGkaGlnaEHSpaDGipvlrLmeevykvdeqilks
                   +NRW+D ++Ql+V+++G++Gl++EHS+a+Gi++++++e+++++ ++++ks
    ZC416.8b   317 LNRWYDATIQLVVSSSGVNGLCIEHSTAEGIVIINMAETAIRYAQKYFKS 366

                   nvneegrpvgspsardgsslplPekLeFditpelqseIekAkekfdklis
                         ++v+++ +     +++P+ L ++++++ ++ ++k++e+fd+l++
    ZC416.8b   367 ------KMVWNDVR-----NVHPKSLTWHFSENSRNILKKQAEVFDELAN 405

                   dldlvvlqFtgfGKgfiKkcklSPDaFiQlAlQLAyYkalyGkfvpTYEs
                   +l+l+vl F++fGK++iK++++SPD+FiQl++QLA+Yk ++G++v TYEs
    ZC416.8b   406 ELELEVLIFNEFGKDSIKNWRVSPDGFIQLIMQLAHYK-THGHLVSTYES 454

                   ASTRaFlhGRTETiRSvTtesleFVqaMlsekpseskeeklqLlkkAckk
                   AS+R+F  GR+++iR++T+e+le+V+aM+s  ++eske+kl+L+kkA+ k
    ZC416.8b   455 ASVRRFGAGRVDNIRANTQEALEWVTAMAS--KKESKERKLELFKKAVLK 502

                   HvqytkeAstGkGvDRHLfgLkllakelgveiPfSplLleiP.iFlDpky
                   +v++t e+++G+GvD+HL++L++la+e++++++     ++iP++FlDp++
    ZC416.8b   503 QVKVTLENISGYGVDNHLCALFCLAREREETTG-----EDIPsLFLDPLW 547

                   llsnsfvlSfqtnstSedqvptetfiggg...FGPVvdDGyGicYniqGe
                   + +++f lS     tS  qv t+++i  +  ++G+Vv+DGyG++Yniq +
    ZC416.8b   548 SEVMRFPLS-----TS--QVTTSLDIPDCyltYGAVVRDGYGCPYNIQ-P 589

                   edifvhissfsScpeTdadrfakyLekaLldmrd<-*
                   ++++++ ++f+S+p+Td ++f+k+L  a++d+++
    ZC416.8b   590 DRVIFAPTAFRSDPRTDLQHFKKSLAGAMRDVKE    623



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