Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC434.2
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Query: ZC434.2 CE06577 locus:rps-7 40S ribosomal protein S7 status:Confirmed TR:Q23312 protein_id:CAB00058.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S7e Ribosomal protein S7e 334.8 9.9e-97 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_S7e 1/1 4 194 .] 1 192 [] 334.8 9.9e-97
Alignments of top-scoring domains:
Ribosomal_S7e: domain 1 of 1, from 4 to 194: score 334.8, E = 9.9e-97
*->asaKIvKagseePdefelqiaQAlleLEmnSkdLkaeLReLqitsar
+ K +K ++ e+e q++QAl++LE+n d + +L eL+i ++
ZC434.2 4 IIGKLLKSDGKVVSEIEKQVSQALIDLETND-DVQSQLKELYIVGVK 49
EievgGgkKAiiifVPvPklkaFqKvQtrLvRELEKKFsdkHVvFiAeRr
E+e+g +k Aiii+VPvP+lkaF+K+ LvRELEKKF ++ + +A Rr
ZC434.2 50 EVELG-NKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRR 98
ILPKPsr..ksRsknkQKRPRSRtLTaVhdaILEDLVFPtEIVGKRiRvk
ILPKP r++k R ++kQKRPRSRtLTaVhda L LV+P+E+VG+RiRvk
ZC434.2 99 ILPKPQRgsKAR-PQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVK 147
lDGskliKVhLDkkdqntieyKvetFssVYkKLTGkdVtFEfPeetl<-*
lDG+k+ KVhLDk q+++ +K++ F+sVY+KLTGkdVtFEfP +
ZC434.2 148 LDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDPIF 194