Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC506.1
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Query: ZC506.1 CE31671 man(9)-alpha-mannosidase status:Partially_confirmed TR:Q09641 protein_id:CAA87371.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_47 Glycosyl hydrolase family 47 815.9 1.4e-241 1
PA PA domain 99.8 9.8e-28 1
SAA_proteins Serum amyloid A protein 5.0 1.4 1
MHC_II_alpha Class II histocompatibility antigen, a 4.8 3.9 1
Amidase_3 N-acetylmuramoyl-L-alanine amidase 4.3 4.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Amidase_3 1/1 280 302 .. 149 172 .] 4.3 4.1
Glyco_hydro_47 1/1 36 473 .. 1 515 [] 815.9 1.4e-241
PA 1/1 654 764 .. 1 111 [] 99.8 9.8e-28
MHC_II_alpha 1/1 799 831 .. 39 71 .. 4.8 3.9
SAA_proteins 1/1 878 893 .. 1 16 [. 5.0 1.4
Alignments of top-scoring domains:
Amidase_3: domain 1 of 1, from 280 to 302: score 4.3, E = 4.1
*->lLksasyqqkvAqaIakGilsyfn<-*
lL+++sy++++ + ++++i++y+n
ZC506.1 280 LLGDESYLDRFNK-HYEAIKRYIN 302
Glyco_hydro_47: domain 1 of 1, from 36 to 473: score 815.9, E = 1.4e-241
*->MFqHAWdgYkkYAwghDELkPiscrgrkrd.dPsnlhssdifGesnl
MF+H+++ Y++YA+++DEL+P+sc+gr+r+ +Ps+++++d++G n+
ZC506.1 36 MFMHGYNSYMNYAFPADELMPLSCKGRIRGvTPSRGDVDDVLG--NF 80
gaTivDaLDTLyiMGledEfreAvdwveetlsfdnplidstVsVFEtTIR
++T+ D+LDTL++M++ dEf++A+d+v+++++fd +d++VsVFEt+IR
ZC506.1 81 SVTLLDSLDTLVVMNELDEFEKAIDLVIKHVRFD---SDHVVSVFETNIR 127
vlGGLLSAYaLtgdpkk.lgdvegsdydkmLLkKAvdlAdrLLpAFnTpt
vlGGL+SA+ L++ +k+++++ ++++yd++LLk+A+++++rLLpAFnT++
ZC506.1 128 VLGGLISAHVLAELVKEkYPN-RLTTYDNQLLKMATEVGNRLLPAFNTTS 176
GIPysrvNlksgvaknytwasggssilAefGTLlLEFtyLSrLTGdptYe
G+P+sr+Nlk+g++++ +++ +++++A+ GT++LEF++L+ LTGdp+Ye
ZC506.1 177 GLPFSRINLKHGMQDHLKRQ--KDTCTACGGTMILEFAALTSLTGDPIYE 224
kkarkardaLwklrcekpeGLypnyinpqtGqqwtqshislGAggDGSfY
kkarka+d+Lw++r ++ +L+++++n+++G +wt++++++GAg+D S+Y
ZC506.1 225 KKARKAMDFLWQQR-HRSSDLMGTVLNVHSG-DWTRRESGIGAGID-SYY 271
EYLlKayiltgktdleakdmyneAieAikkhlrrqskpsgLtyfaelkng
EY+lKayil+g++++ +d++n+++eAik+++++++ f++++++
ZC506.1 272 EYTLKAYILLGDESY--LDRFNKHYEAIKRYINKGPI------FVDVHMH 313
rfkilehkmdHLaCFdGGlfalgadsldaffpgEvlqvlegdkeiaitcH
r + ++ ++G ++dsl+af+pg lqvl+gd+++ai++H
ZC506.1 314 R----P------TVATRG----FMDSLLAFWPG--LQVLKGDVKEAIEMH 347
emYdrtwtklGpepfrFneaveksdqlslyeaaavkvlellafypLRPEv
em +++++k++++p+ F+++++ v++ a +p+RPE+
ZC506.1 348 EMLFQVIQKHKFLPEAFTHDFQ--------------VHW--AEHPIRPEF 381
iEStyyLYRNIaTkdpkmPTTNEYrewgweavqalekycRvkcGgglssR
+ESty+LYR aTkdp+ Y++++++++++++ky++v+cG
ZC506.1 382 VESTYFLYR--ATKDPH------YLHVAKQIMDSINKYVKVPCG------ 417
yaglrnVytksigskeDrMESFfLAETlKYLYLlFdddnalqvellpldk
+a+l++++t+ + eD+MESF+L+ET+KYLY++F+d++ + ++++d+
ZC506.1 418 FAALKDIRTMVK---EDQMESFVLSETFKYLYMIFTDPE---DLMFDPDH 461
ctdevngnwVFNTEAHPlpi<-*
+V++TEAH+lp+
ZC506.1 462 --------YVLTTEAHFLPL 473
PA: domain 1 of 1, from 654 to 764: score 99.8, E = 9.8e-28
*->sp.ggktgpLVyagdgsnsdfsaCesrpgsldgkdvkGKIvLcdrGg
++++ ++++ + +++ +f aC+ + l+++ v GKI++++r +
ZC506.1 654 FGrDIAATKALVGRAAKTIPFRACD---KILNADQVVGKIAVVERSD 697
csfaeKaanAqaAGAaGvIiynnpddglevma.p.etdsndkdspdshgi
c f +Ka+ +q+AGA+G++++++++++ v+++p++++++dkd+ d++gi
ZC506.1 698 CVFQDKARFVQQAGAIGMVVIDHESNSQYVGDrPtFSMAVDKDGKDDIGI 747
PavfvskedGdallsyi<-*
P++f+ +++Gd ll+ +
ZC506.1 748 PSIFLFRAEGDHLLRSL 764
MHC_II_alpha: domain 1 of 1, from 799 to 831: score 4.8, E = 3.9
*->tVwrLPeFadfasfdGdpqgalaniavcKhnLd<-*
t+ rL ++++ f++ pq l++ ++ hnLd
ZC506.1 799 TIGRLLRYGKMFKFPEYPQCSLRDGDIILHNLD 831
SAA_proteins: domain 1 of 1, from 878 to 893: score 5.0, E = 1.4
*->swlsFlkEAaqGawDM<-*
+++ F++ Aa Ga D+
ZC506.1 878 QFYEFFRTAAYGALDL 893