hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZC518.3c
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Query:  ZC518.3c  CE31745    status:Confirmed TN:CAD45610 protein_id:CAD45610.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa   122.0    1.1e-32   1
LRR           Leucine Rich Repeat                        32.2    2.8e-07   4

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
LRR             1/4      79   101 ..     1    25 []    14.6    0.028
LRR             2/4     102   124 ..     1    25 []    15.6    0.015
LRR             3/4     125   147 ..     1    25 []     9.6     0.72
LRR             4/4     148   170 ..     1    25 []     1.8  1.2e+02
Exo_endo_phos   1/1     211   557 ..     1   189 []   122.0  1.1e-32

Alignments of top-scoring domains:
LRR: domain 1 of 4, from 79 to 101: score 14.6, E = 0.028
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      +L  L L++N+lt  lpp+ ++ Lt
    ZC518.3c    79    HLSALFLNNNGLT-RLPPE-IAQLT    101

LRR: domain 2 of 4, from 102 to 124: score 15.6, E = 0.015
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      nL+ Ld+s+N+l+ slp + ++++
    ZC518.3c   102    NLTMLDISNNKLR-SLPTE-LGDMI    124

LRR: domain 3 of 4, from 125 to 147: score 9.6, E = 0.72
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      +L +L+L++N+l+  lp + +++L
    ZC518.3c   125    SLCHLYLNNNQLR-VLPYE-LGKLF    147

LRR: domain 4 of 4, from 148 to 170: score 1.8, E = 1.2e+02
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      ++++L L+gN+l+ +++   + + t
    ZC518.3c   148    RIQTLGLQGNPLSPEISK--IYHET    170

Exo_endo_phos: domain 1 of 1, from 211 to 557: score 122.0, E = 1.1e-32
                   *->lkvltwNvnglra.l.l..................llellr.edpDv
                      ++vl +Nv++ ++ + ++ +  +++  +++ +++ +++++r++ +Dv
    ZC518.3c   211    FTVLCYNVLCDKYaTvNqysycpswalnweyrkglIIKEIRtYEADV 257

                   lgLQEvkls.e.lll.l.ll.gyy............gfgg.gggkgGvai
                   + LQEv ++++++l++++l++ +y +    +++ +++   +++  +G+ai
    ZC518.3c   258 ITLQEVETEqFrTLFqPeLKqLGYagifeaksraktMGEEeRKYVDGCAI 307

                   lsklpllsvilgi.....................................
                   ++k+++++  ++   + ++   ++ +++++  ++  ++++ +     + +
    ZC518.3c   308 FWKVDKFDMDKQYlfefssvamkkastsenmlnrvmprdniglcavlkik 357

                   ...........dli.rvistsgt.fvvvntHlpag....deRlaqlaell
                   ++   ++  ++ +i++  ++ g+++vv+++H +++++  d++l q ++l
    ZC518.3c   358 esvyankflgrMQIpMNDNVVGNpLVVATAHIHWDpefcDVKLVQSMMLT 407

                   dflsf.............ksdpvillGDfNarpdewds.lle.igk....
                   +++s   ++ +++ + ++++ pv+++GDfN+ pd+ +++ l++++ ++++
    ZC518.3c   408 HEVSRvleevskkyqitqQQVPVLICGDFNSLPDSGVFeYLSkGQItrrh 457

                   ....................................igfppTywsyrgss
                    + ++ ++++  ++ +++++++  +++ + ++  + +  p+T+++
    ZC518.3c   458 mdlksfrddsclekftnstdknvishplrldsacdiNSIPFTNYTL---- 503

                   ekkrtpsrlDrilvsg.ll.rvvsl.ille..............vlgSDH
                       +++ +D+i++++++l r+ +l+  +++  ++++  + ++++ +SDH
    ZC518.3c   504 ---DFKGMIDYIFATPqSLaRLGILgPFDPqwvqsnkilgfphpHVASDH 550

                   rPvlatl<-*
                    P++a++
    ZC518.3c   551 IPIMAQY    557

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