Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZC581.7
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Query: ZC581.7 CE28168 protein-tyrosine kinase status:Partially_confirmed TR:O01774 protein_id:AAB54145.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 206.7 3.5e-58 1
SH2 SH2 domain 11.8 0.0078 1
Transposase_8 Transposase 4.9 5.4 1
SRP54_N SRP54-type protein, helical bundle doma 4.9 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SH2 1/1 16 38 .. 1 27 [. 11.8 0.0078
Transposase_8 1/1 91 112 .. 72 93 .] 4.9 5.4
SRP54_N 1/1 135 169 .. 1 35 [. 4.9 7.8
pkinase 1/1 120 369 .. 1 290 [. 206.7 3.5e-58
Alignments of top-scoring domains:
SH2: domain 1 of 1, from 16 to 38: score 11.8, E = 0.0078
*->WyhGkIsRkeAErlLlnpggkdGtFLv<-*
+yhG++ ++A +lL n dG++++
ZC581.7 16 YYHGALMNQDADQLLVN----DGDYMI 38
Transposase_8: domain 1 of 1, from 91 to 112: score 4.9, E = 5.4
*->rkelarlklEneiLKkaaakka<-*
+ke ++ k E+ iLK+a++k
ZC581.7 91 QKETMEIKGERVILKRAIPKGK 112
SRP54_N: domain 1 of 1, from 135 to 169: score 4.9, E = 7.8
*->vlqgLskslnkalnklrglskideelieevleEie<-*
+l +L+k+ +k++ k ++ dee + e+++E +
ZC581.7 135 YLGRLTKNNTKIAVKKLDTEGNDEESLAEMMKEAR 169
pkinase: domain 1 of 1, from 120 to 369: score 206.7, E = 3.5e-58
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk...ekesikekr
+++klG+G++G+Vy++++ k++ + AvK+l+ +++++es+ e
ZC581.7 120 VDFKKKLGSGAYGTVYLGRLT-KNNTKIAVKKLDTegnDEESLAE-- 163
flrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrng
+ E+++++ +HpNIv+++g+ +d ++ lv+E+++gG+ d l+++g
ZC581.7 164 MMKEARVMQLYDHPNIVKFYGYIV-DDIPYLLVLELCNGGSVEDKLVEKG 212
gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaD
+ls k +++++ ++G+eYLH ++++HRD++++N+L++++ vKiaD
ZC581.7 213 AKLSTKTRIMYTYHAACGIEYLHKKKCIHRDIAARNCLIHKE--IVKIAD 260
FGLArllesssklttfvGTpwYmmAPEvileg...rgysskvDvWSlGvi
FG++r + +k + + T ++++APEv ++++r+ + D+ ++ ++
ZC581.7 261 FGMCRATS-IYKVDLNKPTNTRWLAPEV-WDNgetRDNT---DIFAFAIT 305
LyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridple
++E + + P++ + + ++
ZC581.7 306 MWEFF----------------------------EVPYDS-----PYSEWK 322
elfriikrp.glrlplpsncSeelkdLlkkcLnkDPskRpGsatakeiln
++ +k++ g+rlp p+ + + +++k c+++DP++Rp ta e+ +
ZC581.7 323 GYMVKQKTRaGYRLPTPKGMPWDIEEIMKLCWHVDPNQRP---TASELRE 369
<-*
ZC581.7 - -