Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1058.2
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Query: ZK1058.2 CE01102 locus:pat-3 beta integrin status:Partially_confirmed SW:Q27874 protein_id:CAA84677.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
integrin_B Integrin, beta chain 536.4 5.7e-183 1
DSL Delta serrate ligand 7.7 0.54 1
MHC_II_alpha Class II histocompatibility antigen, alp 6.6 1.1 1
kazal Kazal-type serine protease inhibitor dom 6.3 7.8 1
Chlam_OMP3 Chlamydia cysteine-rich outer membrane p 3.2 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Chlam_OMP3 1/1 39 64 .. 28 58 .] 3.2 5.1
MHC_II_alpha 1/1 345 365 .. 64 84 .] 6.6 1.1
integrin_B 1/1 49 474 .. 1 441 [] 536.4 5.7e-183
kazal 1/1 565 579 .. 1 26 [. 6.3 7.8
DSL 1/1 587 600 .. 54 67 .] 7.7 0.54
Alignments of top-scoring domains:
Chlam_OMP3: domain 1 of 1, from 39 to 64: score 3.2, E = 5.1
*->PCesikKKdvdkgCssnaCgsYvPsCskPCG<-*
PC s+ + + Cs+ C Y sC CG
ZK1058.2 39 PCYSLSRD--NYTCSA--CIQYHESC-AWCG 64
MHC_II_alpha: domain 1 of 1, from 345 to 365: score 6.6, E = 1.1
*->avcKhnLdvlikrsnstpatn<-*
av K+n+d+++++sn p+
ZK1058.2 345 AVTKNNQDLYTQLSNALPDVS 365
integrin_B: domain 1 of 1, from 49 to 474: score 536.4, E = 5.7e-183
*->SCeeCilvgPdCAWCtkenFtspGeptSeRCDtranLlakGCpadsI
+C+ Ci+ + +CAWC +F p +RCD ra L GCp I
ZK1058.2 49 TCSACIQYHESCAWCGAPMFDEK-KP-YARCDSRAKLMEHGCPNSYI 93
enPrSsaeiledkplsnrGkGsrldgsditQlsPQelrlrLRPGeaqtFq
e+P+ i+ed ls+ G+ ++ +Q+ PQe+ ++ RP F+
ZK1058.2 94 EDPATKLDITEDSKLSD--QGQVESEEEAVQIKPQEMYVEIRPKSRVRFN 141
lkvrraedYPVDLYYLMDLSySMkDDLenvksLGtdLareMrklTsdfRI
++ r+a dYPVDLYYLMDLSySMkDD ++ +LG La++Mr +T +fR+
ZK1058.2 142 VTYRQAVDYPVDLYYLMDLSYSMKDDKQKLSELGDLLAERMRTVTKNFRL 191
GFGSFVDKtVsPfvsttPryekLrnPCpnkeqnCqPPFsFkHVLsLTddv
GFGSF DK +Pf++ Pr ek PCp+ C P++FkH sLT +
ZK1058.2 192 GFGSFIDKKLMPFID--PRIEKQLSPCPT---PCAEPYGFKHQMSLTTNT 236
deFneeVgkQrISGNLDaPEGGFDAIlQaAVCkekIGWRNDvtRLLVFsT
+F eV k ISGNLDaPEGGFDA+ Qa +C IGWR + VFsT
ZK1058.2 237 AKFKAEVDKAEISGNLDAPEGGFDAVVQALACNKTIGWRERARKMIVFST 286
DagfHfAgDGKnvLgGIVlPNDGrCHLdsnnvYtmSttmDYPSvGqLveK
DagfHfAgDG+ L+G V PNDG CHLd + Yt +DYPS+++L +
ZK1058.2 287 DAGFHFAGDGR--LAGVVEPNDGTCHLDREGYYTETLNQDYPSIALLHQM 334
LsenNIqpIFAVTeeqvplYeeLteLIP..kSaVGeLseDSsNvvQLIid
+ ++IFAVT++ + lY L++ +P+ S+VG+L DS+N+v LI+
ZK1058.2 335 IKDRKANVIFAVTKNNQDLYTQLSNALPdvSSSVGVLANDSRNIVDLIEK 384
AYnkLsSeVe.LevsdlPeglnisytSKmfCknGvkspgqkgRGkCsgvk
Y k+s +++ +++ + egl+++y S C +G+ + + C+g++
ZK1058.2 385 EYLKISEKIImVDNANASEGLKLTYRS--MCLDGTTLKDTN---VCEGIR 429
IgdtVsFeVsvtatkCppegqkhsiiIKPlGFtDelevqvhfiCdvC<-*
+gd+V+FeV+++ t+C+ + +++I P G+ ++l+v v Cd C
ZK1058.2 430 VGDEVQFEVTLENTHCIDK-RDFVLRIGPSGLDETLIVNVKVLCD-C 474
kazal: domain 1 of 1, from 565 to 579: score 6.3, E = 7.8
*->CsrypnptskDGklvaCpreydPVCG<-*
C++++ Cpr+ +++C+
ZK1058.2 565 CDNFN-----------CPRHDRKICA 579
DSL: domain 1 of 1, from 587 to 600: score 7.7, E = 0.54
*->GnklCleGWkGeyC<-*
G+ +C++GW+G C
ZK1058.2 587 GKCICAPGWTGRAC 600