Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1098.1
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Query: ZK1098.1 CE03847 WW\/rsp5\/WWP domain containing proteins (2 domains) status:Partially_confirmed SW:P34600 protein_id:CAA80142.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FF FF domain 246.0 5.3e-70 5
WW WW domain 77.6 4.5e-20 2
Transposase_1 Transposase 10.0 0.13 1
MAAL Methylaspartate ammonia-lyase 7.6 0.55 1
DTW DTW domain 4.4 3.1 1
DUF498 Protein of unknown function (DUF498) 3.1 2.8 1
Lipoprotein_9 NLPA lipoprotein 3.1 7.8 1
MobA_MobL MobA/MobL family 2.6 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MAAL 1/1 53 73 .. 376 396 .. 7.6 0.55
WW 1/2 80 109 .. 1 30 [] 39.4 2.7e-09
WW 2/2 125 154 .. 1 30 [] 45.5 4.9e-11
Transposase_1 1/1 140 155 .. 1 18 [. 10.0 0.13
MobA_MobL 1/1 143 178 .. 168 211 .. 2.6 9
Lipoprotein_9 1/1 227 247 .. 230 253 .] 3.1 7.8
FF 1/5 226 279 .. 1 61 [] 64.2 2.8e-15
FF 2/5 297 346 .. 1 61 [] 47.1 1.2e-10
DTW 1/1 384 400 .. 245 269 .. 4.4 3.1
FF 3/5 364 419 .. 1 61 [] 46.5 1.8e-10
DUF498 1/1 414 436 .. 94 116 .. 3.1 2.8
FF 4/5 444 499 .. 1 61 [] 43.5 1.1e-09
FF 5/5 580 629 .. 1 61 [] 68.1 1.9e-16
Alignments of top-scoring domains:
MAAL: domain 1 of 1, from 53 to 73: score 7.6, E = 0.55
*->HValAtdAaqvLAKPGMGvDE<-*
HVa t++ +L PGMG+DE
ZK1098.1 53 HVAAPTRPSPMLVPPGMGIDE 73
WW: domain 1 of 2, from 80 to 109: score 39.4, E = 2.7e-09
*->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
+++ W +++ ++G+pYY+N +Tk+T+W+kP
ZK1098.1 80 VESDWSVHTNEKGTPYYHNRVTKQTSWIKP 109
WW: domain 2 of 2, from 125 to 154: score 45.5, E = 4.9e-11
*->lppgWeerkdpdGrpYYyNhnTktTqWekP<-*
+ W+e++++dG+pYYyN+ Tk+TqW+kP
ZK1098.1 125 QQGQWKEFMSDDGKPYYYNTLTKKTQWVKP 154
Transposase_1: domain 1 of 1, from 140 to 155: score 10.0, E = 0.13
*->yyYdpENpkRkksWvdpG<-*
yyY+ + +k +Wv+p+
ZK1098.1 140 YYYN--TLTKKTQWVKPD 155
MobA_MobL: domain 1 of 1, from 143 to 178: score 2.6, E = 9
*->GigrkKksrkeyildenGnkiPViDPDTGRqKptaegkkr.tvsi<-
+++ kK ++++++G+ i G qKp+a+++ ++tv++
ZK1098.1 143 NTLTKK----TQWVKPDGEEI-----TKGEQKPAAKAATVdTVAL 178
*
ZK1098.1 - -
Lipoprotein_9: domain 1 of 1, from 227 to 247: score 3.1, E = 7.8
*->qSeeVkkfiekkyPYykGaviPaw<-*
qSe +++ + +k Y +++ i
ZK1098.1 227 QSERFRELLRDK--Y-NDGKITTN 247
FF: domain 1 of 5, from 226 to 279: score 64.2, E = 2.8e-15
*->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial
++ e FreLL+++ ++ + +t+n+ W++a k++++Dpr+ l
ZK1098.1 226 RQSERFRELLRDKYNDGK------ITTNCNWDQAVKWIQNDPRFRIL 266
dsessereqlFedy<-*
+++s e++qlF+++
ZK1098.1 267 NKVS-EKKQLFNAW 279
FF: domain 2 of 5, from 297 to 346: score 47.1, E = 1.2e-10
*->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial
k ke+ +++L+eh++++++ ++++a++++s++p +ia+
ZK1098.1 297 KSKEDLEKFLQEHPKMKES---------LKYQKASDIFSKEPLWIAV 334
dsessereqlFedy<-*
++e +r+++F+d+
ZK1098.1 335 NDE--DRKEIFRDC 346
DTW: domain 1 of 1, from 384 to 400: score 4.4, E = 3.1
*->TWsqArkmfrkspyLgAkrVwlDrd<-*
TW qA+++++++p++ ++
ZK1098.1 384 TWAQAQRILYENPQF--------AE 400
FF: domain 3 of 5, from 364 to 419: score 46.5, E = 1.8e-10
*->kakeaFreLLkehkvityakklliktsnstWseakkklseDpryial
+ ++aF ++L+++++ity+ +tW +a+++l+e p+++
ZK1098.1 364 RDIAAFSHVLQSMEQITYK---------TTWAQAQRILYENPQFAER 401
dses....sereqlFedy<-*
+++ ++++++++Fed+
ZK1098.1 402 KDLHfmdkEDALTVFEDH 419
[output cut off at A = 10 top alignments]