Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1098.3
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Query: ZK1098.3 CE01108 ribonuclease D status:Partially_confirmed SW:P34603 protein_id:CAA80141.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
3_5_exonuclease 3'-5' exonuclease 227.3 2e-65 1
Ribosomal_L38e Ribosomal L38e protein family 6.1 1.2 1
IL2 Interleukin 2 3.8 5.7 1
Vps16_C Vps16, C-terminal region 3.7 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
3_5_exonuclease 1/1 416 620 .. 1 215 [] 227.3 2e-65
IL2 1/1 694 711 .. 53 70 .. 3.8 5.7
Ribosomal_L38e 1/1 703 713 .. 1 11 [. 6.1 1.2
Vps16_C 1/1 704 734 .. 306 336 .] 3.7 4.3
Alignments of top-scoring domains:
3_5_exonuclease: domain 1 of 1, from 416 to 620: score 227.3, E = 2e-65
*->laedtpyeivttedeledlieeLlnake.vvvAvDTEttslrtysy.
++++p++iv++e++le l++eL +++e++++++D+E++++++++++
ZK1098.3 416 EQKKYPIRIVQNEQDLEILLSELGELEEgMYIGYDSEFKPYHLIDVs 462
tlvgiliQistge..nlegayiidplalgddvekgvetaleaLkrlledp
t+++++iQ++++++ +l +++ id la++dd ++++++k l+e++
ZK1098.3 463 TSRLAIIQLFFKDkaWLINCVAIDNLASRDD------VWIRLYKGLFESN 506
nitKVgHnakfDlevLardp.....ffgielenlfdttmlAayllgyers
++ +Vg+++++D+e++ ++p+ +++f+++ ++n+++ + lA+++ ++ ++
ZK1098.3 507 KFSIVGFDIRQDIEAMFTVPsinknFKIENIQNVICVKSLAENVNALSMD 556
ilpl.akthsLadLaekylgheveldkseqisdWrkqhkfarplseeqld
il+l++kt +L +La +++g +++dkseq+++W+ +rpl++ q+
ZK1098.3 557 ILNLsTKTSKLSVLADHLVG--LKMDKSEQCGNWQ-----CRPLRRNQI- 598
lhpeylrYAAeDadyllrLydkLrkeLe<-*
YA +Da++++++++k+ +++
ZK1098.3 599 ------IYAVMDAVAVFEVFQKIVEVVR 620
IL2: domain 1 of 1, from 694 to 711: score 3.8, E = 5.7
*->rlltFkfylPkkAtELkh<-*
rll F++y+P+ tELk+
ZK1098.3 694 RLLGFDVYIPRDVTELKE 711
Ribosomal_L38e: domain 1 of 1, from 703 to 713: score 6.1, E = 1.2
*->PrqIteIKdFL<-*
Pr +te K+FL
ZK1098.3 703 PRDVTELKEFL 713
Vps16_C: domain 1 of 1, from 704 to 734: score 3.7, E = 4.3
*->rDgdeLkellkhiktvedgtiadkvqqalrq<-*
rD++eLke l+ + +e++ + + + ++r+
ZK1098.3 704 RDVTELKEFLRKMDKMEESEQRLVISVPSRS 734