Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1128.5
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Query: ZK1128.5 CE01687 D15Kz1 protein homolog status:Partially_confirmed TR:Q09646 protein_id:CAA87424.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SWIB BAF60b domain of the SWIB complex 134.3 3e-37 1
NPL4 NPL4 family 31.5 8.5e-08 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NPL4 1/1 93 140 .. 293 346 .. 31.5 8.5e-08
SWIB 1/1 221 300 .. 1 81 [] 134.3 3e-37
Alignments of top-scoring domains:
NPL4: domain 1 of 1, from 93 to 140: score 31.5, E = 8.5e-08
*->ilpldedvklLleAVkrlriyi.htfieerqPeqtkdeesalkwkkr
++ +e++k++ + +krlriyi+htfi + Pe+ d +s ++w++r
ZK1128.5 93 DV--QEALKRPQKIKKRLRIYIsHTFIAGKEPEKEGDDASVPMWELR 137
aqsvvseg<-*
+eg
ZK1128.5 138 -----VEG 140
SWIB: domain 1 of 1, from 221 to 300: score 134.3, E = 3e-37
*->itkkfklSpeLakflGeselsRtevvkklWaYIKehnLQDPknKreI
+++kfkl+p+Lak+lG++ +R++++++lW+YIK+h+LQDP+++ +I
ZK1128.5 221 QPMKFKLHPRLAKVLGIAAETRPRIIEALWQYIKTHKLQDPQDRDTI 267
lCDekLksiFggkdrvdmfempKlLtkHllkpep<-*
+ D L+++Fg+ +++++e+p++L+++l++p+p
ZK1128.5 268 NNDLFLEQCFGV-SKMRFMEIPQRLHQLLQQPDP 300