Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1248.14
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Query: ZK1248.14 CE02898 status:Confirmed TR:Q23424 protein_id:AAC71095.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
fzo_mitofusin fzo-like conserved region 379.6 1.6e-111 1
G-gamma GGL domain 4.9 3.4 1
AIG1 AIG1 family 4.1 5.6 1
DNA_PPF DNA polymerase processivity factor 4.0 7.7 1
Adeno_52K Adenoviral protein 52K 1.8 6.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AIG1 1/1 101 125 .. 1 25 [. 4.1 5.6
DNA_PPF 1/1 258 270 .. 1 13 [. 4.0 7.7
Adeno_52K 1/1 306 325 .. 340 359 .] 1.8 6.2
G-gamma 1/1 422 440 .. 1 19 [. 4.9 3.4
fzo_mitofusin 1/1 599 769 .. 1 171 [] 379.6 1.6e-111
Alignments of top-scoring domains:
AIG1: domain 1 of 1, from 101 to 125: score 4.1, E = 5.6
*->rnIVLVGRTGNGKSATGNSILGkkv<-*
+V GRT NGKS+T N L +kv
ZK1248.14 101 MKVVFFGRTSNGKSTTINAMLHEKV 125
DNA_PPF: domain 1 of 1, from 258 to 270: score 4.0, E = 7.7
*->kKlsKdtiaLLkn<-*
kKlsK ++++L n
ZK1248.14 258 KKLSKPNVFILNN 270
Adeno_52K: domain 1 of 1, from 306 to 325: score 1.8, E = 6.2
*->rrElsDeeyMfsLrrALesr<-*
+rE +D+ ++ s r++Lesr
ZK1248.14 306 EREVNDRIFFVSSREVLESR 325
G-gamma: domain 1 of 1, from 422 to 440: score 4.9, E = 3.4
*->vdqlrkeveqLrkelsreR<-*
+++r+++eqLr+e+ +++
ZK1248.14 422 EKAYREQTEQLRAEVHLKV 440
fzo_mitofusin: domain 1 of 1, from 599 to 769: score 379.6, E = 1.6e-111
*->lpPlvsgnseqqemmislVtglASvtSrGSlGilvVgGvvwKavGWr
+++++s++se+q+mm+++V+++A+++++GSlG+lvVgG+v+KavGWr
ZK1248.14 599 RDAEASAASEEQAMMTQMVLTSAAFLANGSLGVLVVGGIVYKAVGWR 645
viavsgaLYGsLYlYERlsWTtaAKERaFKsQFvrhatekLrmvvsaTss
viav+ga+Y++LY++ER++W+++AKE+++K+QF++h+++++++v++a+++
ZK1248.14 646 VIAVGGAAYAGLYAWERMRWNSGAKEQHLKEQFRSHLAARMQQVSTAHTH 695
nCshQvqQeLattFarLcaqVdetlrdLnnelaeLkkqIdaleslQkslK
+C++Q+++e++++F++L+a+V++++r+++n+l+++k+qIda++s++++l+
ZK1248.14 696 HCETQAIREMDQVFDGLKATVGGVHREMKNDLDVQKTQIDAVDSTIRTLG 745
lLRnKAvfLaseLeqFthqYLrss<-*
++++KAvfL+++LeqF+++YLrs+
ZK1248.14 746 TIKGKAVFLLRNLEQFASSYLRSD 769