Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1307.6
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Query: ZK1307.6 CE01695 locus:fzr-1 CDC20 protein status:Partially_confirmed TR:Q09649 protein_id:CAA87433.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 124.0 1.7e-33 5
S_mold_repeat Dictyostelium (slime mold) repeat 6.8 6.2 1
HS1_rep Repeat in HS1/Cortactin 3.8 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HS1_rep 1/1 356 366 .. 1 12 [. 3.8 7
WD40 1/5 428 466 .. 1 39 [] 9.9 0.53
WD40 2/5 470 506 .. 1 39 [] 32.7 1.7e-07
S_mold_repeat 1/1 489 512 .. 1 24 [] 6.8 6.2
WD40 3/5 512 550 .. 1 39 [] 33.1 1.3e-07
WD40 4/5 554 595 .. 1 39 [] 21.5 0.00025
WD40 5/5 642 680 .. 1 39 [] 27.7 4.5e-06
Alignments of top-scoring domains:
HS1_rep: domain 1 of 1, from 356 to 366: score 3.8, E = 7
*->GfGGkfGvqkdr<-*
fGG fGv+++r
ZK1307.6 356 -FGGPFGVDSQR 366
WD40: domain 1 of 5, from 428 to 466: score 9.9, E = 0.53
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ c + ++ vt+v ++ g +la g + g +Wd
ZK1307.6 428 KLCDLGQtNEQDQVTSVQWCDK-GDLLAVGTSRGVTQIWD 466
WD40: domain 2 of 5, from 470 to 506: score 32.7, E = 1.7e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ +++l+gH+s v c+a++ d +++sgSrD+ti d
ZK1307.6 470 QKKTRELtGHSSRVGCLAWNAD---TICSGSRDRTIMHRD 506
S_mold_repeat: domain 1 of 1, from 489 to 512: score 6.8, E = 6.2
*->nactvDsCsnstgvthtpiacddn<-*
na t+ s s++ +++h i+cddn
ZK1307.6 489 NADTICSGSRDRTIMHRDIRCDDN 512
WD40: domain 3 of 5, from 512 to 550: score 33.1, E = 1.3e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + l+ H v+ +++spd ++lasg+ D+ + +W+
ZK1307.6 512 NDMGRKLtNHRQEVCGLKWSPD-KQLLASGGNDNQLLVWN 550
WD40: domain 4 of 5, from 554 to 595: score 21.5, E = 0.00025
*->geclatl.gHtspvtcvafspdsgpylasgS..rDgtiklWd<-*
e+++t++ H+++v ++a+sp++ +l+sg++++D++++ W+
ZK1307.6 554 NEPIQTYtQHNAAVKALAWSPHHHGLLVSGGgtADRCLRFWN 595
WD40: domain 5 of 5, from 642 to 680: score 27.7, E = 4.5e-06
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++++ l gH+ v +a spd g+ +++g D t++ W+
ZK1307.6 642 LQPVTKLvGHQYRVLYLAMSPD-GESIVTGAGDETLRFWH 680