Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZK1307.6
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Query:  ZK1307.6  CE01695  locus:fzr-1 CDC20 protein status:Partially_confirmed TR:Q09649 protein_id:CAA87433.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
WD40          WD domain, G-beta repeat                  124.0    1.7e-33   5
S_mold_repeat Dictyostelium (slime mold) repeat           6.8        6.2   1
HS1_rep       Repeat in HS1/Cortactin                     3.8          7   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
HS1_rep         1/1     356   366 ..     1    12 [.     3.8        7
WD40            1/5     428   466 ..     1    39 []     9.9     0.53
WD40            2/5     470   506 ..     1    39 []    32.7  1.7e-07
S_mold_repeat   1/1     489   512 ..     1    24 []     6.8      6.2
WD40            3/5     512   550 ..     1    39 []    33.1  1.3e-07
WD40            4/5     554   595 ..     1    39 []    21.5  0.00025
WD40            5/5     642   680 ..     1    39 []    27.7  4.5e-06

Alignments of top-scoring domains:
HS1_rep: domain 1 of 1, from 356 to 366: score 3.8, E = 7
                   *->GfGGkfGvqkdr<-*
                       fGG fGv+++r
    ZK1307.6   356    -FGGPFGVDSQR    366

WD40: domain 1 of 5, from 428 to 466: score 9.9, E = 0.53
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      + c    +  ++ vt+v ++   g +la g + g   +Wd
    ZK1307.6   428    KLCDLGQtNEQDQVTSVQWCDK-GDLLAVGTSRGVTQIWD    466

WD40: domain 2 of 5, from 470 to 506: score 32.7, E = 1.7e-07
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                       + +++l+gH+s v c+a++ d   +++sgSrD+ti   d
    ZK1307.6   470    QKKTRELtGHSSRVGCLAWNAD---TICSGSRDRTIMHRD    506

S_mold_repeat: domain 1 of 1, from 489 to 512: score 6.8, E = 6.2
                   *->nactvDsCsnstgvthtpiacddn<-*
                      na t+ s s++ +++h  i+cddn
    ZK1307.6   489    NADTICSGSRDRTIMHRDIRCDDN    512

WD40: domain 3 of 5, from 512 to 550: score 33.1, E = 1.3e-07
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                       +  + l+ H   v+ +++spd  ++lasg+ D+ + +W+
    ZK1307.6   512    NDMGRKLtNHRQEVCGLKWSPD-KQLLASGGNDNQLLVWN    550

WD40: domain 4 of 5, from 554 to 595: score 21.5, E = 0.00025
                   *->geclatl.gHtspvtcvafspdsgpylasgS..rDgtiklWd<-*
                       e+++t++ H+++v ++a+sp++  +l+sg++++D++++ W+
    ZK1307.6   554    NEPIQTYtQHNAAVKALAWSPHHHGLLVSGGgtADRCLRFWN    595

WD40: domain 5 of 5, from 642 to 680: score 27.7, E = 4.5e-06
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                       ++++ l gH+  v  +a spd g+ +++g  D t++ W+
    ZK1307.6   642    LQPVTKLvGHQYRVLYLAMSPD-GESIVTGAGDETLRFWH    680



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