Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK131.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: ZK131.2 CE03253 locus:his-25 histone H3 status:Partially_confirmed SW:P08898
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
histone Core histone H2A/H2B/H3/H4 100.7 2.8e-27 1
TAF TATA box binding protein associated factor ( 2.7 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TAF 1/1 114 129 .. 51 68 .] 2.7 5.9
histone 1/1 17 135 .. 1 117 [] 100.7 2.8e-27
Alignments of top-scoring domains:
TAF: domain 1 of 1, from 114 to 129: score 2.7, E = 5.9
*->HsKRtkLTvsDidsAqLk<-*
H+KR + ++ Di A +
ZK131.2 114 HAKRVTIMPKDIQLA--R 129
histone: domain 1 of 1, from 17 to 135: score 100.7, E = 2.8e-27
*->agkkgagkk..........kkrsrsrkaglqfyvgRvlkqlhpdtgi
++k+ a+k+ +++ + ++++k+++ +++++++++R+++ ++++t++
ZK131.2 17 PRKQLATKAarksapasggVKKPH--RYRPGTVALREIRRYQKSTEL 61
ssragaiansyvadvlErlaaEaleLagnakkdtKkkRitpreiqlAvrl
++r ++++ ++v+++++ +++++ +++++a +++ +++ e++l++++
ZK131.2 62 LIRRAPFQ-RLVREIAQDFKTDL-RFQSSAVMAL----QEAAEAYLVGLF 105
dlelelakhAvtegtkaVtpniskrllgkk<-*
++++++a+hA++++++++++++++r++g++
ZK131.2 106 EDTNLCAIHAKRVTIMPKDIQLARRIRGER 135