Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK131.6
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Query: ZK131.6 CE04501 locus:his-12 histone H2A status:Partially_confirmed TN:CAB05836
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
histone Core histone H2A/H2B/H3/H4 188.1 1.4e-52 1
CBFD_NFYB_HMF Histone-like transcription factor (CBF/ 7.6 3.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CBFD_NFYB_HMF 1/1 27 92 .. 1 67 [] 7.6 3.1
histone 1/1 4 121 .. 1 117 [] 188.1 1.4e-52
Alignments of top-scoring domains:
CBFD_NFYB_HMF: domain 1 of 1, from 27 to 92: score 7.6, E = 3.1
*->LPiAnveRImKkaLPgaarvSkDAkellaecveEfisfiaseAveic
P+ + RI++k a+rv + A+++la ++e + ++ A +
ZK131.6 27 FPVGRLHRILRKG-NYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAA 72
khekRKTikaEDIllAlesL<-*
++k+ i++ +++lA+++
ZK131.6 73 RDNKKTRIAPRHLQLAVRND 92
histone: domain 1 of 1, from 4 to 121: score 188.1, E = 1.4e-52
*->agkkgagkk..kkrsrsrkaglqfyvgRvlkqlhpdtgissragaia
gk+g++k+++k++srs++aglqf+vgR ++ l+ ++++++r+ga+a
ZK131.6 4 RGKGGKAKTggKAKSRSSRAGLQFPVGRLHRILR-KGNYAQRVGAGA 49
nsyvadvlErlaaEaleLagnakkdtKkkRitpreiqlAvrldlelelak
++y+a+vlE+laaE+leLagna++d+Kk+Ri pr++qlAvr+d+el++++
ZK131.6 50 PVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLL 99
hAvtegtkaVtpniskrllgkk<-*
++vt+++++V+pni+++ll+kk
ZK131.6 100 AGVTIAQGGVLPNIQAVLLPKK 121