Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1320.6
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Query: ZK1320.6 CE30716 locus:arc-1 ADP-ribosylation factors (Arf family) (contains ATP\/GTP binding P-loop), Zinc finger, C3HC4 type (RING fi
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
arf ADP-ribosylation factor family 126.7 9.9e-35 1
zf-B_box B-box zinc finger 31.4 3.1e-06 2
Thymidylate_kin Thymidylate kinase 9.8 0.013 1
spectrin Spectrin repeat 5.7 4 1
Apolipoprotein Apolipoprotein A1/A4/E family 5.5 2.4 1
SKI Shikimate kinase 4.7 3.7 1
ABC_tran ABC transporter 4.0 5.2 1
PBP_dimer Penicillin-binding Protein dimerisati 4.0 5.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-B_box 1/2 119 153 .. 12 48 .] 27.5 3.1e-05
zf-B_box 2/2 180 205 .. 17 48 .] 9.3 1.5
Apolipoprotein 1/1 205 226 .. 116 137 .. 5.5 2.4
spectrin 1/1 208 273 .. 35 101 .. 5.7 4
PBP_dimer 1/1 317 334 .. 1 18 [. 4.0 5.8
ABC_tran 1/1 373 391 .. 1 19 [. 4.0 5.2
SKI 1/1 374 393 .. 1 20 [. 4.7 3.7
Thymidylate_kin 1/1 380 395 .. 1 18 [. 9.8 0.013
arf 1/1 373 472 .. 18 114 .. 126.7 9.9e-35
Alignments of top-scoring domains:
zf-B_box: domain 1 of 2, from 119 to 153: score 27.5, E = 3.1e-05
*->plslfCedDqallCvvCdlsgeHsanklargHtvvpl<-*
++ ++C ++ lC C +s H +++++H++ pl
ZK1320.6 119 VAVIYCTVCDSNLCERCSES-TH-STNVLSKHRRIPL 153
zf-B_box: domain 2 of 2, from 180 to 205: score 9.3, E = 1.5
*->CedDqallCvvCdlsgeHsanklargHtvvpl<-*
C + + l+C +C+ g+H +gH v++
ZK1320.6 180 CDTESPLMCMMCRDYGRH------KGHSHVLI 205
Apolipoprotein: domain 1 of 1, from 205 to 226: score 5.5, E = 2.4
*->lgkDlEdvrnrlaPyrdEvqam<-*
++k++Ed+r++++ +++E++++
ZK1320.6 205 IEKEVEDLREKVREHLGELSKQ 226
spectrin: domain 1 of 1, from 208 to 273: score 5.7, E = 4
*->svqaLlkkHealeaelaaheqdrvkqlnelaqkLieegeahpdseei
+v+ L +k +++ el + + + + + +++i e +++++ +
ZK1320.6 208 EVEDLREKVREHLGELSKQS-ETIGNALHSIDSVIHELTPGQEDGSL 253
kerleeLnerWeaLlelaae<-*
+e+++e++ ++++L++++++
ZK1320.6 254 EETRQEVRNHFRRLRTALDR 273
PBP_dimer: domain 1 of 1, from 317 to 334: score 4.0, E = 5.8
*->pipapRGsIyDRnGvaLA<-*
+ +RG+I+DR+ ++LA
ZK1320.6 317 ALIMERGKILDRKDDLLA 334
ABC_tran: domain 1 of 1, from 373 to 391: score 4.0, E = 5.2
*->GevlalvGpNGaGKSTLLk<-*
+++l+G GaGK+++ +
ZK1320.6 373 ESRVVLLGLDGAGKTSIVR 391
SKI: domain 1 of 1, from 374 to 393: score 4.7, E = 3.7
*->rnifLIGmmGaGKsTvGrlL<-*
++L G+ GaGK+++ r+L
ZK1320.6 374 SRVVLLGLDGAGKTSIVRRL 393
Thymidylate_kin: domain 1 of 1, from 380 to 395: score 9.8, E = 0.013
*->iEGiDGaGKTTqaelLke<-*
G+DGaGKT+++++Lk+
ZK1320.6 380 --GLDGAGKTSIVRRLKK 395
arf: domain 1 of 1, from 373 to 472: score 126.7, E = 9.9e-35
*->EmRILiLGLDnAGKTTILykLk...lgeivttiPTiGFNvEtveykN
E R+++LGLD+AGKT I+ +Lk+ +++ ++ PTiGFN+Et+ ykN
ZK1320.6 373 ESRVVLLGLDGAGKTSIVRRLKkvqMDTVMAPHPTIGFNIETIHYKN 419
ikFtvWDvGGQeslRPlWrnYfpnTdavIfVVDSaDreRieeakeELhaL
+++++WDvGG +lR lW++Y++n +a+ +V+D + eR++ea +EL++
ZK1320.6 420 YRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRV 469
Lne<-*
+ +
ZK1320.6 470 MSD 472