Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1320.9
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Query: ZK1320.9 CE01707 acetate utilisation protein status:Confirmed TR:Q09657 protein_id:CAA87047.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
AcetylCoA_hydro Acetyl-CoA hydrolase/transferase 247.9 1.4e-70 1
CK_II_beta Casein kinase II regulatory subunit 4.2 7.7 1
Peptidase_C6 Helper component proteinase 1.9 0.86 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C6 1/1 359 370 .. 1 13 [. 1.9 0.86
CK_II_beta 1/1 421 432 .. 115 126 .. 4.2 7.7
AcetylCoA_hydro 1/1 111 461 .. 93 505 .. 247.9 1.4e-70
Alignments of top-scoring domains:
Peptidase_C6: domain 1 of 1, from 359 to 370: score 1.9, E = 0.86
*->SdditgeqFWkGf<-*
Sd ++g++F++Gf
ZK1320.9 359 SD-SIGRNFFSGF 370
CK_II_beta: domain 1 of 1, from 421 to 432: score 4.2, E = 7.7
*->HARYILTerGLq<-*
HARYI Te G++
ZK1320.9 421 HARYIVTEHGIA 432
AcetylCoA_hydro: domain 1 of 1, from 111 to 461: score 247.9, E = 1.4e-70
*->apkqsgellrkainqGlvsfvdkhlsevpqlleygFvpdeRkDnkiI
++ ++ + rk +n G++++++++lsevp l + g +
ZK1320.9 111 NSLFICPGNRKNVNLGAADYTPIFLSEVPSLYTSGTLN--------V 149
DvAlIettaldehGrvylnfGvgnaPeflvdivKviiEvNhyadPrvAel
D AlI +++de G + ++Gv +d +++ A +
ZK1320.9 150 DFALITVSPPDELG--FCTLGVD------IDTTLAAATS--------AKK 183
vvivvpsnpPrvngGydefiaidkvGvDYIvvDpekvVavvpfllpdakn
++ v+s +Pr g + + ++ D ++a+ + +
ZK1320.9 184 IIALVNSTMPRTRG--HTTVHSSHF-AAMVQTDR--PIAFRQSGGEEMS- 227
mntPeDeqnPMsrmIAenivefvasevkhGRLiedgltLQvGiGnIpnAV
e e +i++ a+ L +g tLQ GiG Ip+
ZK1320.9 228 ----ETE---------QRIGKIIAE-----NLVDNGATLQLGIGAIPDSA 259
vemLgeaglKnLgvhTEvlqDglleLlEeGavtnsqktldRGKsVftfal
++ + K+LgvhTE+ +Dg+++L+ G+++n+ k GK V +fa
ZK1320.9 260 LAAMKQH--KDLGVHTEMFSDGVIDLIDRGIINNQKKAFMPGKTVSSFAF 307
GsrklYdyldrnpeRvalRpvdytNNPeiIarqpkmiAlNqalEiDlyGq
G+ Y d+npe + p d tN i++r km ++N+a+EiDl+Gq
ZK1320.9 308 GTKEFYKKIDNNPE-FYFAPCDFTNHIDIVRRNSKMTSINSAIEIDLTGQ 356
aNStqvggvsPsGKlyllsGiGGqaDFvrgAvlSnd..rqgisalpsyat
+ S ++g + + sG GGq DF+ +d+ +++i alps t
ZK1320.9 357 IVSDSIGRN-------FFSGFGGQVDFMAASPHGFDglGKAIIALPSRTT 399
engISrIvPmlshGagVtvprhdvqvvvTEqGiAyLrGLsikeRAraiIa
++ + IvP+l G gV +r ++vTE GiA L G+si++RA ++I+
ZK1320.9 400 KGQT-KIVPFLTQGSGVVTTRAHARYIVTEHGIANLWGKSIRQRAYELIQ 448
klAHPdyRaLLtdwLeRa<-*
+ HPd R + Le a
ZK1320.9 449 -ISHPDDR----EALEKA 461