Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK1321.4
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Query: ZK1321.4 CE32038 status:Confirmed TR:Q9XTP9 protein_id:CAA88612.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PDZ PDZ domain (Also known as DHR or GLGF) 33.7 3.9e-08 1
Sina Seven in absentia protein family 6.4 1.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Sina 1/1 15 55 .. 169 215 .] 6.4 1.4
PDZ 1/1 7 86 .. 1 84 [] 33.7 3.9e-08
Alignments of top-scoring domains:
Sina: domain 1 of 1, from 15 to 55: score 6.4, E = 1.4
*->RSIreeydkDvlmnsDcLviprneaqlFldwGsedgnLglnVtirav
R Ir ++++ ++++D+L+i+r ea+ + +++ + n + +
ZK1321.4 15 RNIRWGFSV--RQQADGLIIDRVEAESLS----DKAGVKHNDKVDQI 55
<-*
ZK1321.4 - -
PDZ: domain 1 of 1, from 7 to 86: score 33.7, E = 3.9e-08
*->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
+v++ +++ + ++Gfs+ + d g+++ +v + s +++ag k +D
ZK1321.4 7 SVRMNRSDRNIRWGFSVRQQAD-GLIIDRVEAESLSDKAG--VKHND 50
vIlsvNGqdvenmsheravlaikgsggsevtLtvlRd<-*
++ ++NG++++++ + a +i s + ev+L ++R
ZK1321.4 51 KVDQINGRSTRGLDAASANRLIDDSFN-EVRLSLQRF 86