Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/ZK177.6
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Query:  ZK177.6  CE26338   CDC20 status:Partially_confirmed TR:Q09661 protein_id:AAG00051.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        69.2    6.8e-18   4
Htaa     Htaa                                             4.3        5.3   1
cadherin Cadherin domain                                  4.3        7.7   1
mTERF    mTERF                                            3.1        6.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     221   249 ..    10    39 .]    12.3     0.11
WD40       2/4     313   343 ..     8    39 .]    32.7  1.6e-07
cadherin   1/1     354   373 ..    40    63 ..     4.3      7.7
WD40       3/4     356   397 ..     1    39 []    16.6   0.0066
Htaa       1/1     383   403 ..     1    20 [.     4.3      5.3
mTERF      1/1     424   438 ..   350   364 .]     3.1      6.1
WD40       4/4     413   441 ..    10    39 .]     7.3      2.8

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 221 to 249: score 12.3, E = 0.11
                   *->tspvtcvafspdsgpylasgSrDgtiklWd<-*
                      ++ +t+v++s++ g+y+  g + g +k++d
     ZK177.6   221    EGLITSVRWSQE-GRYISLGYASGAVKIYD    249

WD40: domain 2 of 4, from 313 to 343: score 32.7, E = 1.6e-07
                   *->gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      gH   vt++ +s d  ++++sgS+D+t k+Wd
     ZK177.6   313    GHCRDVTALEWSAD-ENMCVSGSSDRTAKIWD    343

cadherin: domain 1 of 1, from 354 to 373: score 4.3, E = 7.7
                   *->gnpggwFrIdpdtGdnegiisttk<-*
                      ++p+ +F+Id++tG+    ++t++
     ZK177.6   354    QDPEPMFTIDEHTGQ----VRTAQ    373

WD40: domain 3 of 4, from 356 to 397: score 16.6, E = 0.0066
                   *->geclatl.gHtspvtcvafspdsgpylasgS..rDgtiklWd<-*
                       e+  t++ Ht+ v+   f+     +la+g++  Dgt+klWd
     ZK177.6   356    PEPMFTIdEHTGQVRTAQFCSFRDGILATGGgiNDGTVKLWD    397

Htaa: domain 1 of 1, from 383 to 403: score 4.3, E = 5.3
                   *->AaggtiqdGtLd.WGVKqSFR<-*
                      A+gg+i dGt++ W VK+ F+
     ZK177.6   383    ATGGGINDGTVKlWDVKRQFQ    403

mTERF: domain 1 of 1, from 424 to 438: score 3.1, E = 6.1
                   *->slssvLkcsdeeFlk<-*
                      ++s++L+ sd  Fl+
     ZK177.6   424    PYSEMLTASDDGFLR    438

WD40: domain 4 of 4, from 413 to 441: score 7.3, E = 2.8
                   *->tspvtcvafspdsgpylasgSrDgtiklWd<-*
                      t++v  + f+ + ++ ++++S+Dg ++++
     ZK177.6   413    TGGVGGIVFNRP-YSEMLTASDDGFLRIYR    441



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