Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK177.6
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Query: ZK177.6 CE26338 CDC20 status:Partially_confirmed TR:Q09661 protein_id:AAG00051.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 69.2 6.8e-18 4
Htaa Htaa 4.3 5.3 1
cadherin Cadherin domain 4.3 7.7 1
mTERF mTERF 3.1 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/4 221 249 .. 10 39 .] 12.3 0.11
WD40 2/4 313 343 .. 8 39 .] 32.7 1.6e-07
cadherin 1/1 354 373 .. 40 63 .. 4.3 7.7
WD40 3/4 356 397 .. 1 39 [] 16.6 0.0066
Htaa 1/1 383 403 .. 1 20 [. 4.3 5.3
mTERF 1/1 424 438 .. 350 364 .] 3.1 6.1
WD40 4/4 413 441 .. 10 39 .] 7.3 2.8
Alignments of top-scoring domains:
WD40: domain 1 of 4, from 221 to 249: score 12.3, E = 0.11
*->tspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +t+v++s++ g+y+ g + g +k++d
ZK177.6 221 EGLITSVRWSQE-GRYISLGYASGAVKIYD 249
WD40: domain 2 of 4, from 313 to 343: score 32.7, E = 1.6e-07
*->gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
gH vt++ +s d ++++sgS+D+t k+Wd
ZK177.6 313 GHCRDVTALEWSAD-ENMCVSGSSDRTAKIWD 343
cadherin: domain 1 of 1, from 354 to 373: score 4.3, E = 7.7
*->gnpggwFrIdpdtGdnegiisttk<-*
++p+ +F+Id++tG+ ++t++
ZK177.6 354 QDPEPMFTIDEHTGQ----VRTAQ 373
WD40: domain 3 of 4, from 356 to 397: score 16.6, E = 0.0066
*->geclatl.gHtspvtcvafspdsgpylasgS..rDgtiklWd<-*
e+ t++ Ht+ v+ f+ +la+g++ Dgt+klWd
ZK177.6 356 PEPMFTIdEHTGQVRTAQFCSFRDGILATGGgiNDGTVKLWD 397
Htaa: domain 1 of 1, from 383 to 403: score 4.3, E = 5.3
*->AaggtiqdGtLd.WGVKqSFR<-*
A+gg+i dGt++ W VK+ F+
ZK177.6 383 ATGGGINDGTVKlWDVKRQFQ 403
mTERF: domain 1 of 1, from 424 to 438: score 3.1, E = 6.1
*->slssvLkcsdeeFlk<-*
++s++L+ sd Fl+
ZK177.6 424 PYSEMLTASDDGFLR 438
WD40: domain 4 of 4, from 413 to 441: score 7.3, E = 2.8
*->tspvtcvafspdsgpylasgSrDgtiklWd<-*
t++v + f+ + ++ ++++S+Dg ++++
ZK177.6 413 TGGVGGIVFNRP-YSEMLTASDDGFLRIYR 441