Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK20.3
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Query: ZK20.3 CE06606 RAD23 protein homolog2 like status:Partially_confirmed TR:Q23451 protein_id:CAA93780.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ubiquitin Ubiquitin family 72.6 7.4e-19 1
UBA UBA/TS-N domain 64.7 4.7e-16 2
DUF232 Putative transcriptional regulator 5.2 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ubiquitin 1/1 52 128 .. 1 83 [] 72.6 7.4e-19
UBA 1/2 177 216 .. 1 45 [] 41.7 1.1e-09
DUF232 1/1 247 290 .. 1 44 [. 5.2 5.9
UBA 2/2 327 368 .. 1 45 [] 24.2 6.6e-05
Alignments of top-scoring domains:
ubiquitin: domain 1 of 1, from 52 to 128: score 72.6, E = 7.4e-19
*->mkifVKtldgkgkvtdgstitlevepsdTVlelKekIedkeg..ipp
++++++tl++ + le+++++T++e+K++++++ g++++p
ZK20.3 52 LSVTFRTLTQV-------NFNLELNEDQTIAEVKALVASEKGddYAP 91
eqQrLiyaGkvLreDdttLaeYniqegsftlhlvlrlr<-*
e Q+Liy+Gk+L +D ++e + ++ +f+++++++ +
ZK20.3 92 ELQKLIYNGKIL-DDSVKVGEVGFDSSKFVVVMLSKRK 128
UBA: domain 1 of 2, from 177 to 216: score 41.7, E = 1.1e-09
*->ideekvkqLreMGGGvfsreeakkALratnnnsDverAvewLleh<-
++ee+v + MG ++re+ + ALra+ +n ++rAve+Ll++
ZK20.3 177 EQEENVLAITGMG---YDREQTIAALRAAFWN--PDRAVEFLLNG 216
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ZK20.3 - -
DUF232: domain 1 of 1, from 247 to 290: score 5.2, E = 5.9
*->tekyleqLaeqlqvlqqeletLqaelerLkaaiaeyeqsketld<-*
+ ++ qLae+ +qq+ e+L+a+l++L a+ ++++q++ + +
ZK20.3 247 MLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQ 290
UBA: domain 2 of 2, from 327 to 368: score 24.2, E = 6.6e-05
*->ideekvkqLreMGGGvfsreeakkALratnnnsDverAvewLleh<-
+++++++++ + + ++++ +++A+ a++ n +e+A+++++++
ZK20.3 327 EEAAAIERIKAIVVN-APEAVVVEAYFACDKN--EEAAINFIFSN 368
*
ZK20.3 - -