Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK20.5
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Query: ZK20.5 CE06608 locus:rpn-12 vegetative protein X like status:Partially_confirmed SW:Q23449 protein_id:CAA93778.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Nin1_C 26S proteasome non-ATPase regulatory su 333.8 1.5e-101 1
Peptidase_M44 Protein G1 2.5 5.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M44 1/1 143 163 .. 207 223 .. 2.5 5.5
Nin1_C 1/1 93 250 .] 1 183 [] 333.8 1.5e-101
Alignments of top-scoring domains:
Peptidase_M44: domain 1 of 1, from 143 to 163: score 2.5, E = 5.5
*->gKiVmv....PsPFYtvmVkV<-*
+K+V+++++ PsPFYt+ +++
ZK20.5 143 NKVVLTekniPSPFYTIFIRI 163
Nin1_C: domain 1 of 1, from 93 to 250: score 333.8, E = 1.5e-101
*->lGLNLLyLLsqNRiadFHteLElLPkkdlNlehdsyIkyvvsLEQyl
+GL+L++LL++NR++dFH++LE++P+k++ ++++yI+++v++EQ+l
ZK20.5 93 TGLHLMFLLAANRLSDFHMLLEQIPQKEQ--TSNAYISTPVRIEQSL 137
MEGaYnKVlsLLakksiPseeYsyFmDILlsTIRdEIAtCiEKSYdkipl
MEGaYnKV++ ++k+iPs++Y++F++I+l+TIR+EIAt+iEKS++++++
ZK20.5 138 MEGAYNKVVL--TEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTA 185
snAtklLllRsndkelekfaeeRHPnWeldnegvYffkEANALETeeikd
++At++Ll+ +nd++++kf++eR +W+ld+e+++f++
ZK20.5 186 KDATVMLLF-DNDEQMKKFGQER--KWHLDGERYVFEI------------ 220
skekaeletepmveelpsleiieqtLsYAreLErIV<-*
e+++e+ +++l+++++++qtL+YA++LE+IV
ZK20.5 221 -----EVAQEK-PVNLDTVRVATQTLFYAKQLEQIV 250