Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK20.6
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Query: ZK20.6 CE06609 neprilysin status:Partially_confirmed TR:Q18673 protein_id:CAA93782.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M13 Peptidase family M13 310.9 2.9e-96 1
Peptidase_M4 Thermolysin metallopeptidase, catalytic 8.4 0.57 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M4 1/1 596 608 .. 153 165 .] 8.4 0.57
Peptidase_M13 1/1 558 765 .. 1 222 [] 310.9 2.9e-96
Alignments of top-scoring domains:
Peptidase_M4: domain 1 of 1, from 596 to 608: score 8.4, E = 0.57
*->VVgHElTHGVTEq<-*
V+gHE+THG+ +
ZK20.6 596 VIGHEITHGFDDT 608
Peptidase_M13: domain 1 of 1, from 558 to 765: score 310.9, E = 2.9e-96
*->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
NA+y+p++N i+fpagil+ Pffd+ +P+a n yGgiG+V+gHEi+
ZK20.6 558 NAFYSPTRNAIAFPAGILQQPFFDARFPKALN--YGGIGAVIGHEIT 602
HgFDdqGiqldeeGsLadcwnlrdWkwtdednkcfqdrvkclidqyseav
HgFDd G+q+d+ G nlrdW w+ + f++r++c i+qy++ +
ZK20.6 603 HGFDDTGRQFDNVG------NLRDW-WDNTTSSKFNERTQCIIEQYADVK 645
kPddkgwfnncankGattlgEniADlgGlraAlkaykkkssdeereeqrl
+ + n G+ t+gEniAD gG+ A+kayk ++ +++ e rl
ZK20.6 646 LRGTDLRIN-----GKLTQGENIADNGGIKQAFKAYKSYLEKHGGQEARL 690
pgLenftpdQLfFetyAyswCrksrpenslrpllvdpHsPnelRvNgavr
p++e +t +QLfF +yA++wC ++pe+ ++ ll+dpHsP RvN+++
ZK20.6 691 PQFESLTNEQLFFVGYAQVWCGAKTPETKTLLLLTDPHSPETARVNTVLT 740
nmPaFasaFnCkpGdkMfpepekrc<-*
n+P+Fa+aF+C++G++M+p +++ +
ZK20.6 741 NQPEFAEAFKCPAGSPMNPTKRCVV 765