Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/ZK287.2
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Query: ZK287.2 CE06611 sulphate permease status:Partially_confirmed TR:Q23454 protein_id:CAA94798.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sulfate_transp Sulfate transporter family 459.1 3.7e-134 1
STAS STAS domain 98.9 1.7e-28 1
Amidase_3 N-acetylmuramoyl-L-alanine amidase 5.5 1.9 1
PAP2 PAP2 superfamily 3.7 7.5 1
VacA Vacuolating cyotoxin 0.7 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
VacA 1/1 168 187 .. 1 21 [. 0.7 2.1
Amidase_3 1/1 335 358 .. 149 172 .] 5.5 1.9
Sulfate_transp 1/1 161 472 .. 1 328 [] 459.1 3.7e-134
PAP2 1/1 450 476 .. 148 174 .] 3.7 7.5
STAS 1/1 482 601 .. 1 116 [] 98.9 1.7e-28
Alignments of top-scoring domains:
VacA: domain 1 of 1, from 168 to 187: score 0.7, E = 2.1
*->AFFttviiPAivGGiAtGaAv<-*
F tt + +v G tGaAv
ZK287.2 168 -FLTTYLSDSLVSGFTTGAAV 187
Amidase_3: domain 1 of 1, from 335 to 358: score 5.5, E = 1.9
*->lLksasyqqkvAqaIakGilsyfn<-*
++k+++ q+ +A +Ia+++ s+f
ZK287.2 335 KYKTDATQELYAIGIASALSSFFP 358
Sulfate_transp: domain 1 of 1, from 161 to 472: score 459.1, E = 3.7e-134
*->lGllRLGfLveflSravisGFmaGaAilIllsQLkgllGlsnlftrh
+G+lRLGfL+++lS++++sGF++GaA+++++sQL +++G++ ++rh
ZK287.2 161 MGILRLGFLTTYLSDSLVSGFTTGAAVHVFTSQLNKVFGIK--LPRH 205
sgivsvlralfdlvdnlhdflkwnwatlvigisfLifLliikllpnpkkr
+gi++++r+ d+++ l+ ++n+ l i+i+ ++fL +++ ++n ++
ZK287.2 206 EGIGMIVRMYRDMIMSLG---SVNFVALGISIFGILFLDLGRTYIN--PI 250
kkklfwvpapapLvavilaTlisylfnrhkladrygvsivGeipsGlppp
kk++++p+p +L+ vi++++is++fn l+ +y+v++v eip+G+p p
ZK287.2 251 VKKFSPIPPPLELILVIFGIVISMIFN---LDAEYHVKTVYEIPRGFPLP 297
slPrlnlspstlldllpialalAlvgllesiltaksfakikgykiDsNkE
s+Prln+ p +l+d++pi A+v+++++++++k fak+++yk D+ +E
ZK287.2 298 SIPRLNFLPALLSDAIPI----AVVCYMFVMSMGKLFAKKHKYKTDATQE 343
LvAqGiaNIvgslfggypatgsfsRSavNvkaGakTqLSgivmavvvllv
L+A+Gia ++s+f++yp+ +s+sRS v++++Ga+TqL++i++++++l v
ZK287.2 344 LYAIGIASALSSFFPVYPVGASLSRSSVCEMSGANTQLYTIFSSFLLLTV 393
lLfltplleyiPmavLaaIiivaligmLidwselirllwklsklDfliwl
+L+l+p+le++Pm++La+I+iv l++++++++el+r l ++sk+Df iwl
ZK287.2 394 ILLLGPFLEPLPMCILACIVIVSLKSLFMQVKELPR-LYRISKYDFAIWL 442
atffgtvfvdNleiGvlvGVaiSllflilrv<-*
+++++t+f+d +++G+++++a+Sl +l+lr
ZK287.2 443 VACLSTIFTD-VTTGLVISLAFSLYTLVLRQ 472
PAP2: domain 1 of 1, from 450 to 476: score 3.7, E = 7.5
*->psDVlaGallGilvallvlllvrrlrd<-*
++DV G+++++++ l++l l + ++
ZK287.2 450 FTDVTTGLVISLAFSLYTLVLRQQWPS 476
STAS: domain 1 of 1, from 482 to 601: score 98.9, E = 1.7e-28
*->yieaetipgie.vlilrlsGpLdfanae.lkerllraiaegperk.k
+ e+++++ +e+v+i+++ G L fan+ +++++ +ai++ pe++++
ZK287.2 482 HDETPRQNVPEnVKIVKFAGSLHFANVTaFQDDMGEAIGKLPEEDpL 528
ielrhvilDlsaVsfiDssGlgaLlelykelkkrGvelvLvgpspevrrt
i+ r++ilD s V fiD +G+ aL +++k++ k Gv+++ +g++++v+ +
ZK287.2 529 IDERTIILDASSVAFIDIMGVDALRDVFKDALKLGVHVFYCGLPEDVLSV 578
leltGlddligke.kifptvaeA<-*
l + + +++ ++++fp+++++
ZK287.2 579 LSNDENFLSVVPPsTFFPSIDSC 601